Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0657
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    27   3.2  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    26   5.6  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    25   7.4  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    25   7.4  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   7.4  

>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 368 LFDLVFKNRNRLANSDVSRQRIPQSDRV 451
           L +L F+ + R+   DV+R+R P +DRV
Sbjct: 94  LMELAFRGKLRM-QKDVNRKRFPLADRV 120


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 563 VSDSLSCVLLMLPAGPTNVCFVIPFPQTQXLFSLLYCA 450
           ++ S+ C+L  L  GP+    V  FP  Q L SLL+ A
Sbjct: 47  LASSVCCILTRLIIGPS--LNVFTFPTDQVLKSLLHAA 82


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 573 LYLRERFSFMRSPDAPCRSNQRLFCY 496
           + L  +  F+ SP+AP R  QR+ C+
Sbjct: 93  ILLAMQIMFVYSPNAPERVTQRIICF 118


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 272 IILMLYCYFSYVLFVLHTLITFYYYSH 192
           + L+  CY+SY+ F+ + ++ F   +H
Sbjct: 174 LYLVALCYYSYLTFIGYQILPFLKNTH 200


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 463 SFTVHAI-RLWNSLPADIRVCKSVSVFKYKVKQFYLSSTE*SWFYTLRIYE 314
           +FT+  + R+W  +P    VC++ S++    +  Y SS +    Y+ ++++
Sbjct: 57  AFTIARMKRVWPRIPTISNVCRARSIYSAAQENAYRSSVKLIQEYSEKVHK 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,898
Number of Sequences: 5004
Number of extensions: 46466
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)