Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0657
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0084 + 8266564-8266699,8267497-8267685,8267772-8267911,826...    29   4.4  
04_01_0003 + 79564-79698,79879-79956,81025-81388,82399-82437,825...    29   4.4  

>05_03_0084 +
           8266564-8266699,8267497-8267685,8267772-8267911,
           8268130-8268225,8268327-8268388,8268559-8268634,
           8268709-8268785,8268866-8268899,8268983-8269132,
           8269222-8269356,8269450-8269533
          Length = 392

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 484 CGKGITKQTLVGPAGSIRRTHERES 558
           C KG+ +  LVGP G++R   E+ S
Sbjct: 338 CAKGLHRLFLVGPGGNLRAVREKYS 362


>04_01_0003 +
           79564-79698,79879-79956,81025-81388,82399-82437,
           82561-82601,83258-83362,83914-83919,84044-84123,
           86744-86913,87664-87748,88067-88125,88451-88464
          Length = 391

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -1

Query: 272 IILMLYCYFSYVLFVLHTLITFYYYSHY---PLAGLLEEISQRNKQCLCT*FXYYSVLCL 102
           I LML+   S +L  ++ L+  + ++ Y   P+ GL+  I+ R   CL       + L +
Sbjct: 77  IALMLFSCLSALLIQVNGLLIMFIFNEYSVNPIEGLVSIIALRLFSCLSALLIQVNSLLI 136

Query: 101 VF 96
           VF
Sbjct: 137 VF 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,980,424
Number of Sequences: 37544
Number of extensions: 264534
Number of successful extensions: 496
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)