Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0657
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-8|AAY55858.2|  216|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AL032660-1|CAA21752.1|  711|Caenorhabditis elegans Hypothetical ...    27   9.0  

>U58760-8|AAY55858.2|  216|Caenorhabditis elegans Hypothetical
           protein C27A2.7 protein.
          Length = 216

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 487 HKPNXYSHSFTVHAIRLWNSLPADIRVCKSV 395
           HK   +S++F V+   LW   P D RV K V
Sbjct: 103 HKAIYHSYNFCVYKCILWRFSPQDQRVWKCV 133


>AL032660-1|CAA21752.1|  711|Caenorhabditis elegans Hypothetical
           protein Y70G10A.2 protein.
          Length = 711

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 527 GASGERMKENRSRKYKGEXGLCXILNRGLIFG 622
           G +G+R ++ +S++YKG+ G   ++   +  G
Sbjct: 193 GYAGDRCEKEKSKEYKGDLGYSSVVGATITLG 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,742,504
Number of Sequences: 27780
Number of extensions: 265107
Number of successful extensions: 584
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)