Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0657
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              23   3.4  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              23   3.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.0  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 303 LLIIFAMCMCYNSHVV 256
           +++IFA C+C N+  +
Sbjct: 4   IVVIFAFCICVNAMTI 19


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 303 LLIIFAMCMCYNSHVV 256
           +++IFA C+C N+  +
Sbjct: 4   IVVIFAFCICVNAMTI 19


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 203 YYSHYPLAGLLEEISQRNKQ 144
           YY+   LAG ++E +Q+ +Q
Sbjct: 221 YYAQVNLAGYIQEQNQQQQQ 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,721
Number of Sequences: 438
Number of extensions: 3717
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)