Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0656
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    46   4e-06
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    27   1.9  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   7.8  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   7.8  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    25   7.8  

>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = +3

Query: 363 YEEWFEKLELPDTLASWFSITELHVWLLMVR 455
           +E W++K E+P T  SWF IT+LH+W+L  R
Sbjct: 123 FEFWYQKCEIPMTFQSWFQITQLHLWILHTR 153


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
 Frame = +1

Query: 112 LKETKMLNSRV-IAQVLLQQRH-KIRNICNPGIIKCNKIYREHSTVAAEE 255
           L E+K+ NS++   Q L+ +R  +I N+   GI + N+I+R+ ST+  E+
Sbjct: 155 LTESKISNSQLEYQQRLINERQGEIENLTQ-GINELNEIFRDLSTIINEQ 203


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +3

Query: 291 MDQDRTRLKLTGYFLYESIHANIVYEEWFEKLELP---DTLASWFSITELHVWLLMVRYM 461
           + +D+T  ++   F Y+  H  ++ E W     LP    TL +   +T+     ++    
Sbjct: 301 LHKDKTVFQVMNLFNYDQNHKCLIAEGWCPTANLPMVQKTLRNISDLTDSQAPTIL---- 356

Query: 462 AEDIAHTAKEKXTYVK 509
             ++ HT+++  TY +
Sbjct: 357 --NVVHTSEQPPTYFR 370


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 120 NKNAEQPSNSPSIVTTTTQNSKYL 191
           +KN E+P N   I T  T NS+YL
Sbjct: 465 SKNYEKPINLRFISTPGTNNSRYL 488


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 54  FTLNKVNFLKSKFINQWKLSQRNKNAEQPSNSPS 155
           F +NK++ + S+ +N+W    RN     P  S S
Sbjct: 199 FVINKIDLVPSEVLNKWVTYLRNFFPTIPMRSAS 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,037
Number of Sequences: 5004
Number of extensions: 51829
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)