Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0656
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0264 + 32738224-32738553,32739298-32739768,32739864-327400...    37   0.013
11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910           29   4.7  

>03_06_0264 +
           32738224-32738553,32739298-32739768,32739864-32740007,
           32740570-32740671,32741758-32741873,32741959-32742028,
           32742308-32742376,32742898-32742948,32743038-32743196
          Length = 503

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
 Frame = -2

Query: 395 RKFKLFKPFFINNISMNTFI*KITCKF*TSSVLI---HPSDGFHKLLYIASSAATV 237
           +K KL  PFFI N ++ TF   IT  +  S VL+   +PS+G HKL+Y A  AATV
Sbjct: 326 KKVKLSIPFFIPNFTLGTFG-AITQLY-VSKVLVRNSYPSNG-HKLIYRAMHAATV 378


>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
          Length = 1155

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 354  NIVYEEWFEKLELPDTLASWFSITELHVWLLMVRYMAEDIAH 479
            ++  E W+ + +LP+ L    S+ EL +    +    EDI H
Sbjct: 1023 SLTLERWYNQAQLPNWLGQLVSLKELKINRFEMNESQEDIKH 1064


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,280,885
Number of Sequences: 37544
Number of extensions: 299463
Number of successful extensions: 610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)