Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0656
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16686| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 29   4.8  
SB_3065| Best HMM Match : HD (HMM E-Value=0.018)                       28   6.3  

>SB_16686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +3

Query: 600 SIAKKQVSELSEQFQAALVAYDEG-LSDDKILA 695
           ++ ++ + EL ++F   + AYDEG LS D++LA
Sbjct: 173 TVVRESLHELVQEFYGLIFAYDEGLLSHDRVLA 205


>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1182

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 57  TLNKVNFLKSKFINQWKLSQRNKNAEQPSNSPSIVTTTTQNSKY 188
           T  K N      ++    +  N N +Q +N    +TTTT  +KY
Sbjct: 179 TATKNNIDDGNNVDDRSSNGNNNNVDQDNNDDETITTTTNKNKY 222


>SB_3065| Best HMM Match : HD (HMM E-Value=0.018)
          Length = 270

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 588 GANPSIAKKQVSELSEQFQAALVAYDEGLSDDKIL 692
           GAN  I +  VS+     QAA++A  EG  DD IL
Sbjct: 23  GANDYIGEP-VSQTEHMVQAAMLAEKEGFGDDVIL 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,311,442
Number of Sequences: 59808
Number of extensions: 373960
Number of successful extensions: 677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)