Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0656
         (696 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071639-1|AAL49261.1|  259|Drosophila melanogaster RE68357p pro...   101   9e-22
AE014296-1166|AAF50633.1|  259|Drosophila melanogaster CG10075-P...   101   9e-22

>AY071639-1|AAL49261.1|  259|Drosophila melanogaster RE68357p
           protein.
          Length = 259

 Score =  101 bits (242), Expect = 9e-22
 Identities = 57/146 (39%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
 Frame = +3

Query: 261 VKKFMKAVGWMDQDRTRLKLTGYFLYESIHANIVYEEWFEKLELPDTLASWFSITELHVW 440
           +K+ +  VG+    + RLK+T + LYES+   I Y  +F    LP+T  SWF +TELHVW
Sbjct: 67  LKRVLNKVGFTPNTKARLKVTSHLLYESVADKINYVTFFRDFNLPNTFNSWFLVTELHVW 126

Query: 441 LLMVRYMAEDIAHTAKEKXTYVKXMVILSGIA**KHCGLMFLVGLRLLEGANPSIAKKQV 620
           LL++R MAE       E   +++  ++       +          + L   NPS  ++Q+
Sbjct: 127 LLLMRSMAE--GSETGEDGRFLRNCIV-------EAMWGDVNTRAKKLGAHNPSRTRQQI 177

Query: 621 SELSEQFQAALVAYDEG-LSDDKILA 695
             LSEQFQAAL+AYDEG +SDD++LA
Sbjct: 178 ETLSEQFQAALIAYDEGIMSDDRVLA 203



 Score = 35.9 bits (79), Expect = 0.053
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +2

Query: 512 DGHFVRXCXVEALWADVSSRIKAI 583
           DG F+R C VEA+W DV++R K +
Sbjct: 142 DGRFLRNCIVEAMWGDVNTRAKKL 165


>AE014296-1166|AAF50633.1|  259|Drosophila melanogaster CG10075-PA
           protein.
          Length = 259

 Score =  101 bits (242), Expect = 9e-22
 Identities = 57/146 (39%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
 Frame = +3

Query: 261 VKKFMKAVGWMDQDRTRLKLTGYFLYESIHANIVYEEWFEKLELPDTLASWFSITELHVW 440
           +K+ +  VG+    + RLK+T + LYES+   I Y  +F    LP+T  SWF +TELHVW
Sbjct: 67  LKRVLNKVGFTPNTKARLKVTSHLLYESVADKINYVTFFRDFNLPNTFNSWFLVTELHVW 126

Query: 441 LLMVRYMAEDIAHTAKEKXTYVKXMVILSGIA**KHCGLMFLVGLRLLEGANPSIAKKQV 620
           LL++R MAE       E   +++  ++       +          + L   NPS  ++Q+
Sbjct: 127 LLLMRSMAE--GSETGEDGRFLRNCIV-------EAMWGDVNTRAKKLGAHNPSRTRQQI 177

Query: 621 SELSEQFQAALVAYDEG-LSDDKILA 695
             LSEQFQAAL+AYDEG +SDD++LA
Sbjct: 178 ETLSEQFQAALIAYDEGIMSDDRVLA 203



 Score = 35.9 bits (79), Expect = 0.053
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +2

Query: 512 DGHFVRXCXVEALWADVSSRIKAI 583
           DG F+R C VEA+W DV++R K +
Sbjct: 142 DGRFLRNCIVEAMWGDVNTRAKKL 165


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,919,656
Number of Sequences: 53049
Number of extensions: 535463
Number of successful extensions: 1491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)