Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0656
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21324-8|AAA62561.1| 190|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z81536-6|CAB04370.1| 352|Caenorhabditis elegans Hypothetical pr... 29 2.4
U64836-3|AAG24058.1| 175|Caenorhabditis elegans Hypothetical pr... 28 5.5
U61957-5|AAB03417.3| 559|Caenorhabditis elegans Suppressor of c... 28 5.5
U61957-4|AAM81129.1| 558|Caenorhabditis elegans Suppressor of c... 28 5.5
AF068919-1|AAC39129.1| 559|Caenorhabditis elegans Ras-binding p... 28 5.5
AF054827-1|AAC25697.1| 559|Caenorhabditis elegans leucine-rich ... 28 5.5
U23168-11|AAC38811.2| 454|Caenorhabditis elegans Hypothetical p... 28 7.3
Z81497-6|CAB04082.2| 604|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z75953-5|CAB00102.2| 604|Caenorhabditis elegans Hypothetical pr... 27 9.7
>U21324-8|AAA62561.1| 190|Caenorhabditis elegans Hypothetical
protein C35D10.5 protein.
Length = 190
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 333 LYESIHANIVYEEWFEKLELPDTLASWFSITELHVWLLMVRYMAE 467
LY + N + + E L D ++SW+ +T +H W++++R +E
Sbjct: 23 LYYNCADNYDFAKLCEAFGLGDYMSSWYKLTLMHTWMVLMRLHSE 67
>Z81536-6|CAB04370.1| 352|Caenorhabditis elegans Hypothetical
protein F40D4.8 protein.
Length = 352
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 616 CFFAIDGFAPSNSLNPTRNISPQCFYXAXPDKMTIXLT 503
C+F D A S +++ T + P+C + PD T+ T
Sbjct: 163 CYFIYDYTAHSTTISETWELPPECANTSEPDTYTLYYT 200
>U64836-3|AAG24058.1| 175|Caenorhabditis elegans Hypothetical
protein F10G2.4 protein.
Length = 175
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/47 (21%), Positives = 23/47 (48%)
Frame = +3
Query: 39 Q*NETFTLNKVNFLKSKFINQWKLSQRNKNAEQPSNSPSIVTTTTQN 179
Q +++F ++ + + WK + N +E PS+ + T+T +
Sbjct: 37 QRDDSFNISPASSSPDMLVETWKSDEENAKSESPSSQSTTATSTNDD 83
>U61957-5|AAB03417.3| 559|Caenorhabditis elegans Suppressor of clr
protein 2, isoforma protein.
Length = 559
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 378 EKLELPDTLASWFSITELHVWLLMVRYMAEDI 473
E + LP + SW SITEL++ ++ + EDI
Sbjct: 363 ELVSLPLDMGSWTSITELNLSTNQLKVLPEDI 394
>U61957-4|AAM81129.1| 558|Caenorhabditis elegans Suppressor of clr
protein 2, isoformb protein.
Length = 558
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 378 EKLELPDTLASWFSITELHVWLLMVRYMAEDI 473
E + LP + SW SITEL++ ++ + EDI
Sbjct: 362 ELVSLPLDMGSWTSITELNLSTNQLKVLPEDI 393
>AF068919-1|AAC39129.1| 559|Caenorhabditis elegans Ras-binding
protein SUR-8 protein.
Length = 559
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 378 EKLELPDTLASWFSITELHVWLLMVRYMAEDI 473
E + LP + SW SITEL++ ++ + EDI
Sbjct: 363 ELVSLPLDMGSWTSITELNLSTNQLKVLPEDI 394
>AF054827-1|AAC25697.1| 559|Caenorhabditis elegans leucine-rich
repeat protein SOC-2 protein.
Length = 559
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 378 EKLELPDTLASWFSITELHVWLLMVRYMAEDI 473
E + LP + SW SITEL++ ++ + EDI
Sbjct: 363 ELVSLPLDMGSWTSITELNLSTNQLKVLPEDI 394
>U23168-11|AAC38811.2| 454|Caenorhabditis elegans Hypothetical
protein B0228.8 protein.
Length = 454
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 54 FTLNKVNFLKSKFINQWKL 110
F N +NFLKSK N WKL
Sbjct: 69 FNENLLNFLKSKSENDWKL 87
>Z81497-6|CAB04082.2| 604|Caenorhabditis elegans Hypothetical
protein F10C2.3 protein.
Length = 604
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 393 PDTLASWFSITEL-HVWLLMVRYMAEDIAHTAKE 491
P SW +TEL H WL VRY ED+A+ K+
Sbjct: 340 PKFAISW--LTELGHDWLNQVRYGDEDLANFLKK 371
>Z75953-5|CAB00102.2| 604|Caenorhabditis elegans Hypothetical
protein F10C2.3 protein.
Length = 604
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 393 PDTLASWFSITEL-HVWLLMVRYMAEDIAHTAKE 491
P SW +TEL H WL VRY ED+A+ K+
Sbjct: 340 PKFAISW--LTELGHDWLNQVRYGDEDLANFLKK 371
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,674,353
Number of Sequences: 27780
Number of extensions: 288101
Number of successful extensions: 683
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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