Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0656
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.4  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 87  KFINQWKLSQRNKNAEQPSNSPSIVTTTTQNSK 185
           KF   W L     N  QP  SP ++T   + SK
Sbjct: 137 KFDRLWVLDSGLVNNNQPMCSPKLLTFDLKTSK 169


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 598 GFAPSNSLNPTRNISPQCFY 539
           GF      NP  NIS  C Y
Sbjct: 109 GFPGEEMWNPNTNISEDCLY 128


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -3

Query: 598 GFAPSNSLNPTRNISPQCFY 539
           GF      NP  NIS  C Y
Sbjct: 109 GFPGEEMWNPNTNISEDCLY 128


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 622 DTCFFAIDGFAPSNSLNPTRNISPQ 548
           D C+F +DG  P +   P   +SPQ
Sbjct: 425 DKCYFCLDGKLPHDDQPP---LSPQ 446


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 411 WFSITELHVWLLMV 452
           W S+ ELH W+ ++
Sbjct: 85  WTSVMELHSWMTLM 98


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 369 EWFEKLELPDTLASWFSI 422
           +WFEKLEL      WF++
Sbjct: 263 DWFEKLEL-----KWFAV 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,578
Number of Sequences: 438
Number of extensions: 3349
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)