Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0655
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    30   0.27 
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    28   1.5  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   7.8  

>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 22  IINNDTKEQKINLSLKC*LLESNLGYIYINE 114
           ++  D +E  IN+ + C L++ ++G + +NE
Sbjct: 788 VLTGDRQETAINIGMSCKLIDEDMGLVIVNE 818


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -1

Query: 421 DVKWLLETS--TTQMPPPALVHNIGSQ*LQQLPHPSNRNALLLQK*AGWWYLPVRTHKDI 248
           D+ W L  S  TTQ     +  + GS    Q+ +  N   L+     GW Y P +T K++
Sbjct: 19  DLTWDLSRSHLTTQYKSFYMCFDDGSFGYLQIAY-GNLGLLVKVTPLGWTYYPAKTEKNV 77

Query: 247 PPV 239
            P+
Sbjct: 78  EPI 80


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 345 SYNSCPILQTETHYCFRNRQGGGTY 271
           SY + P+ Q+   Y   N  GGG Y
Sbjct: 43  SYGTPPVQQSSAMYGVNNSMGGGMY 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,859
Number of Sequences: 5004
Number of extensions: 51120
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)