Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0655
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.4  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   8.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 515 NSEIHNNIIPPHVGLSMLRRMDNPFPFCSESVA 613
           N  +  NI+PPHV    L R  +     S+S A
Sbjct: 753 NGALIYNILPPHVAAYFLSRARHHDDLYSQSYA 785


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 633 LLMLRLPATDSEQNGNGLSILLSM 562
           +L+  LPA   E+   G+SILLS+
Sbjct: 252 VLVFYLPAEAGEKVTLGISILLSL 275


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 381 GICVVDVSSNHLT 419
           G+C V+VSS ++T
Sbjct: 125 GVCTVEVSSENMT 137


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 381 GICVVDVSSNHLT 419
           G+C V+VSS ++T
Sbjct: 125 GVCTVEVSSENMT 137


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 142 NYITNEVVINHYF 180
           NY T +V +NH++
Sbjct: 220 NYFTEDVGLNHFY 232


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 142 NYITNEVVINHYF 180
           NY T +V +NH++
Sbjct: 220 NYFTEDVGLNHFY 232


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 512 YNSEIHNNIIPPHVGLSMLRRMDNPFPF 595
           YN+  +NN  P H  ++ + ++  P PF
Sbjct: 324 YNN-YNNNYKPLHYNINYIEQIPVPVPF 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,351
Number of Sequences: 438
Number of extensions: 4088
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)