Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0654
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    26   5.9  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.9  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   7.8  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    25   7.8  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    25   7.8  

>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 307 MPAKIHTVLKTI*ILLSVCLF 369
           +PA  H V++ + +LLS+C F
Sbjct: 149 IPAHTHIVVRVLLLLLSICFF 169


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 307 MPAKIHTVLKTI*ILLSVCLF 369
           +PA  H V++ + +LLS+C F
Sbjct: 149 IPAHTHIVVRVLLLLLSICFF 169


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 594 VLYND-LSSLKLEHMISSQLRQGRLVVMTYARKTD 695
           VL+ D LSSL L+H+ +S L    L + T A+++D
Sbjct: 379 VLFVDALSSLSLKHIDASMLLNELLPLFTKAKESD 413


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 630 VPVLKTRDHCTIQLTLGLTYNSSIKFTQNI 541
           VPV  TR+HC I++ +   Y   IK ++++
Sbjct: 455 VPV--TRNHCAIEILIAAAYTRLIKRSKSL 482


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 529 PMKCFIIY*LNPAILWCVF 473
           PM  F I  LNPA  WC F
Sbjct: 347 PMHAFYIPSLNPAPRWCSF 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,058
Number of Sequences: 5004
Number of extensions: 49744
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)