Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0654
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026...    29   3.5  
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723...    28   8.1  

>01_05_0117 -
           18300157-18301106,18301149-18301543,18302592-18302681,
           18303723-18303836,18303903-18304046,18316147-18316312,
           18316396-18317130,18317219-18317422,18317496-18318177,
           18318272-18318528,18318604-18319298,18319345-18319382,
           18319847-18319928,18320018-18320112,18320443-18320526,
           18320601-18320891,18321521-18321853,18321948-18322150,
           18322243-18322399,18322482-18322585,18322675-18322835,
           18323511-18323824,18324317-18324589,18324666-18324967,
           18325459-18325549,18326140-18326190,18326700-18326768,
           18326926-18327017,18327082-18327148,18328582-18328746,
           18329027-18329103,18329572-18329766,18330208-18330275,
           18331081-18331172,18331399-18331522,18331608-18331705,
           18332384-18332997,18333620-18333626
          Length = 2892

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/42 (30%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = -3

Query: 307 FSEKLLFCP-YKYTFQFYFLKLPLNLVCLSVY**LSCYI*GF 185
           F+++ +F P + YTF  + LK+P+ L+ ++++  ++ Y  GF
Sbjct: 853 FTQRDVFYPAWAYTFPTWILKIPITLIQVTIWVTMTYYPIGF 894


>01_05_0660 -
           24071523-24071780,24071873-24072127,24072209-24072380,
           24072458-24072685,24072785-24072918,24073005-24073088,
           24073231-24073521,24073599-24073931,24074016-24074266,
           24074354-24074620,24074707-24074867,24074978-24075294,
           24075386-24075667,24075753-24076054,24076147-24076237,
           24076326-24076379,24076497-24076573,24076700-24076859,
           24077129-24077213,24077421-24077630,24077736-24078097
          Length = 1457

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 295 LLFCP-YKYTFQFYFLKLPLNLVCLSVY**LSCYI*GFCS 179
           LLF P + YT   + LK+P+  + +  Y  L+ Y+ GF S
Sbjct: 604 LLFYPAWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDS 643


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,209,876
Number of Sequences: 37544
Number of extensions: 259563
Number of successful extensions: 467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)