Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0653
         (631 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    25   0.52 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    25   0.52 
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   1.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   3.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.9  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   6.4  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    21   8.5  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   8.5  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -1

Query: 376 CGHPQCVSRDLFCH 335
           CG+ +C+ ++LFC+
Sbjct: 116 CGNGECIDKELFCN 129


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -1

Query: 376 CGHPQCVSRDLFCH 335
           CG+ +C+ ++LFC+
Sbjct: 123 CGNGECIDKELFCN 136


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 376 CGHPQCVSRDLFCH 335
           CG   C+ R LFC+
Sbjct: 124 CGDGNCIERGLFCN 137


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 466 SEHSPWNIRYKIQRDRSPSANPEAPNDPREWGLSXILTGL 585
           S + P N++  +++  +P   P AP+     GL   L+G+
Sbjct: 55  SFYLPMNMQGFVKQQTAPHGPPYAPHPSLSSGLGGGLSGM 94


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 188 RRPWTSAMPGAEPSRCLPLNTLPSLV*RR 274
           RRP   A   A P   LPL++ P ++ R+
Sbjct: 326 RRPSDGATSEALPFELLPLDSEPGMLKRK 354


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 158 HTAHLMVSGYRRPWTSAMPGAEPS 229
           +T H+   G+  P+T  M G E S
Sbjct: 486 YTIHMGYHGFHNPFTCNMCGVECS 509


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 194 GDGNHSPSGGP 162
           G GN+ P GGP
Sbjct: 530 GSGNNQPPGGP 540



 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 446  VSSRTIPQSTPHGTYGIKYRGTEVPP 523
            V+ ++  Q +   + G+  +GT VPP
Sbjct: 1088 VALKSAQQGSSSSSEGVPLKGTAVPP 1113


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +3

Query: 327 DGTWQKRSLETHCGXPQWL 383
           DG WQ+ +L  +     W+
Sbjct: 223 DGEWQRDNLNANSSITHWI 241


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 91  HGYTLYGGMQKYYSNEIQPR*YNPLRLP 8
           HG+T+   M KY       R  + L+LP
Sbjct: 87  HGFTILNSMHKYQPRFHLVRANDILKLP 114


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -1

Query: 337 HVPSGYGMSSPPRCFPSAMTCPSSNEAWES 248
           H P  Y    PP   PS    P SN   E+
Sbjct: 24  HSPEPYPPRCPPIYEPSCQYSPVSNSDSEN 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,084
Number of Sequences: 336
Number of extensions: 3820
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)