Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0653
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 31 1.00
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 29 3.0
01_05_0008 - 17063377-17063813,17064937-17065052,17065284-170657... 29 3.0
05_04_0407 - 21040536-21041352,21041452-21042044 29 4.0
02_05_0686 - 30900748-30902167,30903442-30904742 29 4.0
11_01_0484 - 3720376-3720671,3721209-3721767,3722209-3722640,372... 28 5.3
10_01_0144 - 1705429-1706250 28 5.3
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050 28 7.0
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 27 9.3
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 30.7 bits (66), Expect = 1.00
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 487 IRYKIQRDRSPSANPEAPNDPREWGLSXILTGLLCMESNGRSWYLGAP 630
+R + R R+PSA+ PREW +S + TG +G S AP
Sbjct: 615 LRVSVPRPRAPSASAPPAAAPREWTVS-LTTGRYSFGDSGASSSSAAP 661
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -3
Query: 551 LGSFGASGFAEG--LRSLCILYRMFHGE 474
+GSFGAS AEG LR C+ Y F+G+
Sbjct: 280 IGSFGASFDAEGTCLRGNCVYYSGFNGK 307
>01_05_0008 -
17063377-17063813,17064937-17065052,17065284-17065728,
17066421-17066760
Length = 445
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 412 WRAVRW*KRDVGIISNNSSEHSPWNIRYKIQRDRSPSANPEAP 540
W RW K D+ I S HS W +R + + S +P P
Sbjct: 161 WFVARWLKPDLMIESGAFKGHSTWVLRQAMPNTKIISLSPRHP 203
>05_04_0407 - 21040536-21041352,21041452-21042044
Length = 469
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Frame = -2
Query: 540 WSLWVCGGTSVPLYFIPYVP----WGVL*GI 460
W +CGGT+V L F+ YV WG+ GI
Sbjct: 99 WYFGMCGGTAVTLVFLSYVQDNIGWGLGFGI 129
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Frame = -3
Query: 575 RIXDNPHSLGSFGASGFAEGLRSLCILYRMFHGEC---SEELFEMIP-TSRFYHRTARHR 408
R+ L ++G GFA GLR E E++ E++ T+ +YH A
Sbjct: 745 RLAGTKKLLETYGDDGFARGLRGFVKAAEQELNELKGNQEKVLELVQRTTEYYHTGATKD 804
Query: 407 SRVHPYYL 384
HP L
Sbjct: 805 KNAHPLQL 812
>11_01_0484 -
3720376-3720671,3721209-3721767,3722209-3722640,
3723126-3723485
Length = 548
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 400 FIHTTWSHCGHPQCVSRDLFCHVPS-GYGMSSPPRCFPSAMTCPSSNEAWESIKR 239
F +WS H Q D H P+ G SP P NEAWE++++
Sbjct: 38 FDEQSWSELSHRQNDGFDSIMHSPAFPSGFDSPFSLGTLGDPHPLVNEAWEALRK 92
>10_01_0144 - 1705429-1706250
Length = 273
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 393 WMNSTPVAGGAMVKTRCWYHLEQFLRALP 479
W+ +TP+A CWY L L +P
Sbjct: 241 WLRTTPLALAPPSSAPCWYFLTTLLEIIP 269
>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
Length = 478
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -3
Query: 269 FKRGLGEY*EVGSGLALPLALLKSMGDGNHSPSGGPYARL 150
+ RG+ + GS LA L LL M PSG YARL
Sbjct: 55 YDRGIQHH--AGSDLASSLRLLADMQAAGLRPSGAAYARL 92
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 364 QCVSRDLFCHVPSGYGMSSPPRCFPSAMTCP 272
QCV++D + SPPRC PS+ +CP
Sbjct: 107 QCVAKDAAAQPEMSWPRGSPPRC-PSS-SCP 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,775,797
Number of Sequences: 37544
Number of extensions: 506374
Number of successful extensions: 1246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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