Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0653
(631 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41545-7|AAK39136.1| 687|Caenorhabditis elegans Hypothetical pr... 28 4.8
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z99266-1|CAB16464.1| 292|Caenorhabditis elegans F15C11.2 protein. 28 6.3
Z98262-3|CAD44156.1| 454|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z98262-2|CAD44155.1| 484|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z98262-1|CAB10932.1| 502|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z71260-4|CAD44116.1| 454|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z71260-3|CAD44115.1| 484|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z71260-2|CAA95799.1| 502|Caenorhabditis elegans Hypothetical pr... 28 6.3
U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 28 6.3
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 6.3
>U41545-7|AAK39136.1| 687|Caenorhabditis elegans Hypothetical
protein C02F12.8 protein.
Length = 687
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 370 HPQCVSRDLFCHVPSGYGMSSPPRCFPSAMT 278
HPQ V++ + HVP G +PP+ P+ T
Sbjct: 162 HPQIVNQPMHPHVPVGSQNYNPPQFVPAPPT 192
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 184 LPSPMDFSNARGRAKPLPTS*YSPKPRLK 270
+P PM F + KP P PKP+LK
Sbjct: 241 IPKPMPFPKPMPKPKPKPKPMPKPKPKLK 269
>Z99266-1|CAB16464.1| 292|Caenorhabditis elegans F15C11.2 protein.
Length = 292
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 149 ADGHTAHLMVSGYRRPWTSAMPGAEPS 229
ADGHT HL++ RP T A A P+
Sbjct: 69 ADGHTVHLVIRNQARP-TPAPAAATPT 94
>Z98262-3|CAD44156.1| 454|Caenorhabditis elegans Hypothetical
protein F15C11.2c protein.
Length = 454
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 149 ADGHTAHLMVSGYRRPWTSAMPGAEPS 229
ADGHT HL++ RP T A A P+
Sbjct: 69 ADGHTVHLVIRNQARP-TPAPAAATPT 94
>Z98262-2|CAD44155.1| 484|Caenorhabditis elegans Hypothetical
protein F15C11.2b protein.
Length = 484
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 149 ADGHTAHLMVSGYRRPWTSAMPGAEPS 229
ADGHT HL++ RP T A A P+
Sbjct: 69 ADGHTVHLVIRNQARP-TPAPAAATPT 94
>Z98262-1|CAB10932.1| 502|Caenorhabditis elegans Hypothetical
protein F15C11.2a protein.
Length = 502
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 149 ADGHTAHLMVSGYRRPWTSAMPGAEPS 229
ADGHT HL++ RP T A A P+
Sbjct: 69 ADGHTVHLVIRNQARP-TPAPAAATPT 94
>Z71260-4|CAD44116.1| 454|Caenorhabditis elegans Hypothetical
protein F15C11.2c protein.
Length = 454
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 149 ADGHTAHLMVSGYRRPWTSAMPGAEPS 229
ADGHT HL++ RP T A A P+
Sbjct: 69 ADGHTVHLVIRNQARP-TPAPAAATPT 94
>Z71260-3|CAD44115.1| 484|Caenorhabditis elegans Hypothetical
protein F15C11.2b protein.
Length = 484
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 149 ADGHTAHLMVSGYRRPWTSAMPGAEPS 229
ADGHT HL++ RP T A A P+
Sbjct: 69 ADGHTVHLVIRNQARP-TPAPAAATPT 94
>Z71260-2|CAA95799.1| 502|Caenorhabditis elegans Hypothetical
protein F15C11.2a protein.
Length = 502
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 149 ADGHTAHLMVSGYRRPWTSAMPGAEPS 229
ADGHT HL++ RP T A A P+
Sbjct: 69 ADGHTVHLVIRNQARP-TPAPAAATPT 94
>U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical
protein F02E8.5 protein.
Length = 578
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 385 WSHCGHPQCVSRDLFCH 335
WS C HP CV+ +F H
Sbjct: 12 WSRCVHPSCVAWVIFIH 28
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -3
Query: 605 PLDSIQRRPVRIXDNPHSLGSFGASGFAEGLRSLCILYRMFHGECSEELFE 453
PL + R + + LG A A+ LR L ++ +++H CS+E+ E
Sbjct: 177 PLTLLLRNMMEVGQRKDQLG---ADEIAQWLRVLLLIAKVYHSLCSQEIPE 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,302,262
Number of Sequences: 27780
Number of extensions: 373788
Number of successful extensions: 991
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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