Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0653
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.4  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.4  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.4  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.5  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.9  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 326 GWYVAKKISGNALWMXAVAPGSMDELYSG-GGRCDGKNEM 442
           GW +  +I  N L    + PG+   L+ G G +  G NE+
Sbjct: 13  GWQIRDRIGDNELEERIIYPGT---LWCGHGNKSSGPNEL 49


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 326 GWYVAKKISGNALWMXAVAPGSMDELYSG-GGRCDGKNEM 442
           GW +  +I  N L    + PG+   L+ G G +  G NE+
Sbjct: 18  GWQIRDRIGDNELEERIIYPGT---LWCGHGNKSSGPNEL 54


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 326 GWYVAKKISGNALWMXAVAPGSMDELYSG-GGRCDGKNEM 442
           GW +  +I  N L    + PG+   L+ G G +  G NE+
Sbjct: 18  GWQIRDRIGDNELEERIIYPGT---LWCGHGNKSSGPNEL 54


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 166 PPDGEWLPSPMDFSNARG 219
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 536 ASGFAEGLRSLCILY 492
           ASG A G  SLC +Y
Sbjct: 120 ASGGAAGATSLCFVY 134


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 536 ASGFAEGLRSLCILY 492
           ASG A G  SLC +Y
Sbjct: 120 ASGGAAGATSLCFVY 134


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 388 TWSHCGHPQCVSRDL 344
           TW+ CG P+ V+ ++
Sbjct: 522 TWTFCGTPEYVAPEV 536


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,340
Number of Sequences: 438
Number of extensions: 5017
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)