Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0653
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26860.1 68416.m03361 self-incompatibility protein-related si...    33   0.21 
At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR...    28   4.4  
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ...    28   5.9  
At3g25110.1 68416.m03136 acyl-[acyl carrier protein] thioesteras...    28   5.9  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    28   5.9  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    28   5.9  
At5g19280.1 68418.m02298 kinase associated protein phosphatase (...    27   7.8  
At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar...    27   7.8  

>At3g26860.1 68416.m03361 self-incompatibility protein-related
           similar to S3 self-incompatibility protein [Papaver
           rhoeas] GI:1107841
          Length = 122

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 464 PQSTPHGTYGIKYRGTEVPPQTQRLQTIRENGDYR--QS*RASSVWSPMEEAGIWEPR 631
           P   P G +   Y GT +   T+ + T+R+  +YR  Q+  A  ++S  ++ G+W+ R
Sbjct: 48  PLIIPIGGHRFNYFGTNIFATTRFMCTLRQGPNYRHHQNFTAFKLYSASDDGGVWDWR 105


>At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1197

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 593  IQRRPVRIXDNPHSLGSFGASGFAEGLRSLCILYRMF 483
            I+     I    HS    G +GF  G+ S+C+LY M+
Sbjct: 1160 IENSSTNIPSEAHSSQKTGFNGF-NGMYSVCVLYEMY 1195


>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 578

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 548 GSFGASGFAEGLRSLCILYRMFHGECSEELFEMIPTSRFYH 426
           G+ G    +    +  I  +MFH EC E  FE+I  S  +H
Sbjct: 92  GACGRPTLSATYYACLICEKMFHKECVESPFEIIHPSHPFH 132


>At3g25110.1 68416.m03136 acyl-[acyl carrier protein] thioesterase /
           acyl-ACP thioesterase / oleoyl-[acyl-carrier protein]
           hydrolase / S-acyl fatty acid synthase thioesterase
           identical to acyl-(acyl carrier protein) thioesterase
           [Arabidopsis thaliana] GI:804946
          Length = 362

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +2

Query: 419 RCDGKNEMLVSSRTIPQSTPHGTYGIKYRGTEVPPQTQRLQTIRENGDYRQS*RASSVW 595
           R + + + +V S T   S   GT G    GT+    +Q L  +R +GD ++  R +++W
Sbjct: 298 RRECQQDDVVDSLTTTTSEIGGTNGSATSGTQGHNDSQFLHLLRLSGDGQEINRGTTLW 356


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -1

Query: 370 HPQCVSRDLFCHVPSGYGMSSPPRCFPSAMTCPS 269
           HP   S     H PSG   SSPP   P  +T PS
Sbjct: 119 HPSTPSHPTPSHPPSGGYYSSPPPRTPVVVTPPS 152


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -1

Query: 370 HPQCVSRDLFCHVPSGYGMSSPPRCFPSAMTCPS 269
           HP   S     H PSG   SSPP   P  +T PS
Sbjct: 119 HPSTPSHPTPSHPPSGGYYSSPPPRTPVVVTPPS 152


>At5g19280.1 68418.m02298 kinase associated protein phosphatase
           (KAPP) identical to Kinase associated protein
           phosphatase (SP:P46014) [Arabidopsis thaliana]; contains
           Pfam PF00481: Protein phosphatase 2C domain; contains
           Pfam PF00498: FHA domain
          Length = 581

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 484 NIRYKIQRDRSPSANPEAPNDPREWGLSXILTG 582
           N++Y +++DR  + +P    D R W    ++ G
Sbjct: 157 NLQYNLEKDRLINLSPRLVEDQRSWLFLEVIAG 189


>At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar to
           receptor-like protein kinase (Ipomoea nil) (U77888)
          Length = 1029

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -1

Query: 403 EFIHTTWS--HCGHPQCVSRDLFCHVPSGYGMSSPPRCFPSAMTCPSSNEAWES 248
           E +H  W+  HC     V++ L  ++     +S   + FPS      SN A+ES
Sbjct: 62  ELVHCHWTGVHCDANGYVAKLLLSNMNLSGNVSDQIQSFPSLQALDLSNNAFES 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,761,373
Number of Sequences: 28952
Number of extensions: 360651
Number of successful extensions: 855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)