Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0652
         (697 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5HBE7 Cluster: Putative integral membrane protein; n=2...    34   3.8  
UniRef50_Q8EW59 Cluster: Putative integral membrane protein; n=1...    33   6.7  
UniRef50_Q2YZN0 Cluster: HAM1 protein homolog; n=2; Deltaproteob...    33   8.8  

>UniRef50_Q5HBE7 Cluster: Putative integral membrane protein; n=2;
           Ehrlichia ruminantium|Rep: Putative integral membrane
           protein - Ehrlichia ruminantium (strain Welgevonden)
          Length = 260

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
 Frame = -3

Query: 608 TILIRFEISRSFKTVTTIRRKYSYTRKYIP----VITFKCFHHYFFVIALILSVVKSYVV 441
           TI+I   +S     +  I   Y +T+K IP    V++      Y   I   L+++KS++ 
Sbjct: 20  TIVILLAVSDILTIIKLIPHTYEHTKKIIPLCSIVLSVSFILLYSIYILYNLNIIKSHLQ 79

Query: 440 NNNINTK--VCNHVCYISTLGPLK*F**NLV*IVIVSTLENN 321
                +K  +C+H+ +I     L     N++ I++  T  NN
Sbjct: 80  QKITFSKKSICSHIGFIGESASLLGL--NIISIILTITSSNN 119


>UniRef50_Q8EW59 Cluster: Putative integral membrane protein; n=1;
           Mycoplasma penetrans|Rep: Putative integral membrane
           protein - Mycoplasma penetrans
          Length = 554

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 21/67 (31%), Positives = 36/67 (53%)
 Frame = -3

Query: 587 ISRSFKTVTTIRRKYSYTRKYIPVITFKCFHHYFFVIALILSVVKSYVVNNNINTKVCNH 408
           +S + K V  + +KY Y++K +  IT            LIL+ +K++++ NNIN +  NH
Sbjct: 403 LSLADKIVLDVDKKYDYSKKILNDITAN---------KLILTQMKAFIIENNINVE--NH 451

Query: 407 VCYISTL 387
           +  I  L
Sbjct: 452 IILIDKL 458


>UniRef50_Q2YZN0 Cluster: HAM1 protein homolog; n=2;
           Deltaproteobacteria|Rep: HAM1 protein homolog -
           uncultured delta proteobacterium
          Length = 202

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 12/59 (20%), Positives = 30/59 (50%)
 Frame = +3

Query: 417 YFCIDIIIYYITFNHREYQGNYKEVMMKTLECNNGYVFTSIRVFTSYRRHCFKTPGNLK 593
           +FC  ++IY     H  ++G ++ +++     +NG+ +  I   T +++   + P  +K
Sbjct: 117 FFCCVLVIYKPDNTHYSFEGKWRGIIIDERRGSNGFGYDPIFYVTEFKKTAAELPPEIK 175


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,674,175
Number of Sequences: 1657284
Number of extensions: 11894893
Number of successful extensions: 25276
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25267
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)