Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0652
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1663 + 38980710-38981052,38981826-38982967                       28   6.2  
01_05_0681 - 24242485-24242560,24242721-24242785,24242874-242430...    28   6.2  

>01_06_1663 + 38980710-38981052,38981826-38982967
          Length = 494

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 296 PGAVNSNPYYFPGLKLLRFIPNFIKIISE 382
           P  V + P+YF  L +LR + NF++ + +
Sbjct: 167 PAVVATKPHYFRDLDVLRTVENFLEYVPD 195


>01_05_0681 -
           24242485-24242560,24242721-24242785,24242874-24243029,
           24243073-24243121,24243291-24243366,24243456-24243666,
           24244038-24244160,24244245-24244363,24244439-24244532,
           24245123-24245233,24245336-24245392
          Length = 378

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 360 ISSKSFQRSESGNITDMVTYFCIDII---IYYITFNHREYQGNYKEVMMKTLE 509
           I    +  + SG   ++V  F I+ +   +Y + F HR YQGN + +    L+
Sbjct: 16  IGGMRYSLAASGARAEVVEAFDINDVANDVYELNFGHRPYQGNIQTLTASDLD 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,919,254
Number of Sequences: 37544
Number of extensions: 289910
Number of successful extensions: 579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)