Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0652
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)                   29   3.6  
SB_1850| Best HMM Match : fn3 (HMM E-Value=7.5e-22)                    29   3.6  
SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.3  

>SB_25298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 378 QRSESGNITDMVTYFCIDIIIYYI-TFNHREYQGNYKEVM-MKTLECNNGY 524
           + +++G+I      F    I  YI  FNHR Y+  +K+++  K+ E  +GY
Sbjct: 645 EMTDAGSIIATYLIFLSSAINPYIYAFNHRSYRNEFKKILSWKSNESASGY 695


>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 460

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 387 RTSEMILMKFGINRNSFNPGK*YGLLFTAPGTNLLTL 277
           +TSE  L  +G++ NS++PG       T+PG +  TL
Sbjct: 167 KTSESRLSPYGVDENSWSPGSSQSSNCTSPGGHSPTL 203


>SB_1850| Best HMM Match : fn3 (HMM E-Value=7.5e-22)
          Length = 461

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 432 IIIYYITFNHREYQGNYKEVMMKTLECNNGYVFTSIRVFTSY 557
           +I+ Y    H      YKE+M+    CN   V  ++R+FT Y
Sbjct: 326 LIVSYTVRYHISGNSTYKEMMIAN--CNQSAVIINLRMFTRY 365


>SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 296 PGAVNSNPYYFPGLKLLRFIPNFIKIISEVREWKYNRHGYI 418
           PG   SNP + P  +L +FIP+   I   +R+     H ++
Sbjct: 628 PGENQSNPRFSPVNQLAKFIPDLATINEPLRQLLKKEHQWL 668


>SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 22/89 (24%), Positives = 37/89 (41%)
 Frame = +3

Query: 237 VSICSFLL*FTLYIVSADSCPAL*TVTHIIFQG*NYYDLYQISSKSFQRSESGNITDMVT 416
           + +CS L    + ++   SC     VT ++F       LY  + +S  R+E   I   + 
Sbjct: 100 LKMCSVLFLLKVTLLKVLSCFGTAIVTVVLF-------LYLQALQSENRTEPWYIAVCLA 152

Query: 417 YFCIDIIIYYITFNHREYQGNYKEVMMKT 503
             C   ++   TF+H      YK   +KT
Sbjct: 153 GICFGNLLRTFTFHHERLLEGYKGTRIKT 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,507,301
Number of Sequences: 59808
Number of extensions: 375337
Number of successful extensions: 779
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)