Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0652
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P...    31   0.55 
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P...    31   0.55 
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id...    30   1.3  
At5g61480.1 68418.m07714 leucine-rich repeat transmembrane prote...    29   3.9  
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id...    29   3.9  
At5g02310.1 68418.m00154 eceriferum3 protein, putative similar t...    28   5.1  
At5g23060.1 68418.m02696 expressed protein                             27   9.0  

>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
           (PRCFC) identical to 20S proteasome beta subunit PBB2
           [Arabidopsis thaliana] GI:3421104, cDNA proteasome
           subunit prcfc GI:2511575
          Length = 274

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 390 SGNITDMVTYFCIDIIIYYITFNHREYQGNYKEVMMKTLECNNGYVFT 533
           SG   D+ +   +DI +  IT  H+EY  NY E   +T   + GY FT
Sbjct: 200 SGIFNDLGSGSNVDICV--ITKGHKEYLRNYMEPNPRTYVSSKGYSFT 245


>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
           (PRCFC) identical to 20S proteasome beta subunit PBB2
           [Arabidopsis thaliana] GI:3421104, cDNA proteasome
           subunit prcfc GI:2511575
          Length = 274

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 390 SGNITDMVTYFCIDIIIYYITFNHREYQGNYKEVMMKTLECNNGYVFT 533
           SG   D+ +   +DI +  IT  H+EY  NY E   +T   + GY FT
Sbjct: 200 SGIFNDLGSGSNVDICV--ITKGHKEYLRNYMEPNPRTYVSSKGYSFT 245


>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
           identical to 20S proteasome beta subunit PBB1 (PBB1)
           GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
           677-692 (1998)); contains Pfam profile: PF00227
           proteasome A-type and B-type;
          Length = 267

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +3

Query: 390 SGNITDMVTYFCIDIIIYYITFNHREYQGNYKEVMMKTLECNNGYVFTSIRVFTSYRRH 566
           SG   D+ +   +DI +  IT  ++EY  NY E   +T   + GY FT  +  +S++ H
Sbjct: 200 SGIFNDLGSGSNVDICV--ITKGNKEYLRNYMEPNPRTYVSSKGYSFTK-KTGSSHQNH 255


>At5g61480.1 68418.m07714 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1041

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 94  LPECLWKRPNKGSFYLSFSNKNG 26
           LPE +WK PN   F  SFSN  G
Sbjct: 481 LPENIWKAPNLQIFSASFSNLIG 503


>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
           identical to 20S proteasome beta subunit PBB1 (PBB1)
           GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
           677-692 (1998)); contains Pfam profile: PF00227
           proteasome A-type and B-type;
          Length = 273

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 390 SGNITDMVTYFCIDIIIYYITFNHREYQGNYKEVMMKTLECNNGYVFT 533
           SG   D+ +   +DI +  IT  ++EY  NY E   +T   + GY FT
Sbjct: 200 SGIFNDLGSGSNVDICV--ITKGNKEYLRNYMEPNPRTYVSSKGYSFT 245


>At5g02310.1 68418.m00154 eceriferum3 protein, putative similar to
           eceriferum3 GI:1669655 from [Arabidopsis thaliana]
          Length = 2006

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -3

Query: 590 EISRSFKTVTTIRRKYSYTRKY--IPVITFKCFHHYFFVIALILSVVKSYVVN 438
           E+SRS+ T+ T  +  +  ++   IP+     + H FFV+   ++V+ S +VN
Sbjct: 427 ELSRSWLTLLTFAQGMNPLKRETGIPIDEENDYMHLFFVLGHSIAVIHSLLVN 479


>At5g23060.1 68418.m02696 expressed protein
          Length = 387

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +3

Query: 411 VTYFCIDIIIYYITFNHREYQGNYKEVMMKTLECNNGYVFTSIR 542
           + Y  +  +   I+FN R Y+G+        L C   Y+   IR
Sbjct: 198 LAYLLLPPVFSAISFNFRGYKGDLTPAQTLDLLCTKNYLMVDIR 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,615,809
Number of Sequences: 28952
Number of extensions: 261446
Number of successful extensions: 538
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)