Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0651
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   1.9  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    27   3.4  

>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 159 KLLMIHNVFILYITL--DFVQYS*IRNIIRLLKHVETNVYF 275
           +++  H V + + TL  DF     +R++++   H  TN+YF
Sbjct: 811 RIITAHQVDVEWSTLQRDFTDVDPVRSLMKKTMHGSTNIYF 851


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 171 IHNVFILYITLDFVQYS*IRNIIRLLKHVETNVYFV 278
           + N  +LY TLD ++Y+ +     ++K +E+ +Y V
Sbjct: 543 VENNVLLYATLDHLKYALMSGDTGVIKTLESTLYLV 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,633
Number of Sequences: 5004
Number of extensions: 43955
Number of successful extensions: 67
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)