Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0650
         (695 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CA695 Cluster: cyclic nucleotide-binding domain...    36   0.95 
UniRef50_Q9NZQ8 Cluster: MTR1; n=31; Euteleostomi|Rep: MTR1 - Ho...    34   3.8  
UniRef50_UPI00006D00F1 Cluster: hypothetical protein TTHERM_0082...    33   6.7  
UniRef50_UPI00006CCCEA Cluster: hypothetical protein TTHERM_0034...    33   6.7  
UniRef50_Q4J6L6 Cluster: Conserved membrane protein; n=1; Sulfol...    33   6.7  
UniRef50_Q4N5Q9 Cluster: Putative uncharacterized protein; n=2; ...    33   8.8  

>UniRef50_UPI00006CA695 Cluster: cyclic nucleotide-binding domain
            containing protein; n=1; Tetrahymena thermophila
            SB210|Rep: cyclic nucleotide-binding domain containing
            protein - Tetrahymena thermophila SB210
          Length = 3091

 Score = 35.9 bits (79), Expect = 0.95
 Identities = 28/108 (25%), Positives = 47/108 (43%)
 Frame = +1

Query: 70   LN*KYFYDLISRLLFPFDYYLHSNISLFQLLVVIRGNFKIILTTVVIIKLKYSVRDFNSF 249
            LN KY Y +       FDY+LH   + F  L  +   F I       I + Y +   N  
Sbjct: 2094 LNWKYVYKIFLLFDSKFDYFLHPTSNAFYQLQWMSMIFSIYSIIFTPIYICYEIELNNYI 2153

Query: 250  DYFD*YKLRRVPILLGVNCVNQALLFQGRKATDTKKCTL*PFVYTSRN 393
             +F+     ++ + L ++ +      QG   TDTKK  +  +++ S+N
Sbjct: 2154 FFFEVLSAFQLVVQLYID-IKTPFYIQGTLVTDTKK--IIAYMWKSKN 2198


>UniRef50_Q9NZQ8 Cluster: MTR1; n=31; Euteleostomi|Rep: MTR1 - Homo
            sapiens (Human)
          Length = 1165

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +3

Query: 45   SFPSIFA-WTQLKVLLRFNLTFIVSIR--LLSTFEYIF--ISVTRCYSWKFQNYSDYRRY 209
            S PS++A W  + +L+ F L   V +   L++ F Y F  +       WKFQ Y+    Y
Sbjct: 945  SCPSLYANWLVILLLVTFLLVTNVLLMNLLIAMFSYTFQVVQGNADMFWKFQRYNLIVEY 1004

Query: 210  HKIKILSPRF 239
            H+   L+P F
Sbjct: 1005 HERPALAPPF 1014


>UniRef50_UPI00006D00F1 Cluster: hypothetical protein
           TTHERM_00823840; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00823840 - Tetrahymena
           thermophila SB210
          Length = 386

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
 Frame = +1

Query: 100 SRLLFPFDYYLHSNISLFQLLVVIRGNFKIILT----TVVIIK----LKYSVRDFNSFDY 255
           S LLF   Y L+SN +LF+ L+V+ GN  + +T    + V+IK    LKY V  F +   
Sbjct: 243 SALLFFDSYVLYSNSTLFK-LIVLTGNVLLFITFLFISTVLIKEKKNLKYCVYIFQALSI 301

Query: 256 FD*Y 267
            D Y
Sbjct: 302 LDLY 305


>UniRef50_UPI00006CCCEA Cluster: hypothetical protein TTHERM_00340180;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00340180 - Tetrahymena thermophila SB210
          Length = 2636

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
 Frame = +3

Query: 3    ARDKIDLV----NFVNPISFP------SIFAWTQLKVLLRFNLTFIVSIRLLSTFEYIFI 152
            AR +ID +     +  P S+P      S   W  + +L  F   ++  ++L   + Y+FI
Sbjct: 1735 ARTRIDFIIGIRKYTGPASYPRDQGFFSGIFWDYIILLCLFVQRYL--LQLEGRWTYVFI 1792

Query: 153  SVTRCYSWKFQN-YSDYRRYHKIKI 224
            S   CY  +F++   +Y +YHK+ +
Sbjct: 1793 SKDECYIPQFRDPQGEYSKYHKLPL 1817


>UniRef50_Q4J6L6 Cluster: Conserved membrane protein; n=1;
           Sulfolobus acidocaldarius|Rep: Conserved membrane
           protein - Sulfolobus acidocaldarius
          Length = 316

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = +1

Query: 85  FYDLISRLLFPFDYYLHSNISLFQLLVVIRGNFKIILTTVVIIKLKYSVRDFNSF 249
           ++ +ISRL FP   YL ++++   LL +    F+ + + V+II   +S+ D   +
Sbjct: 54  YFGMISRLFFPARNYLATHLTSLFLLAIPYYPFQALASLVLIITELWSISDIRGY 108


>UniRef50_Q4N5Q9 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria parva
          Length = 1091

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = +1

Query: 178 NFKIILTTVV-IIKLKYSVRDFNSFDYFD*YKLRRVPI--LLGVNCVNQALLFQG 333
           N+ II++T+V ++KL ++  D NSFDY D   L    +  LL +  + Q +L  G
Sbjct: 746 NYLIIISTIVNLLKLLFTRPDENSFDYLDEASLLLANLVKLLDIASIKQLVLSSG 800


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 487,595,789
Number of Sequences: 1657284
Number of extensions: 8383526
Number of successful extensions: 20636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20535
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)