Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0650
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    29   0.84 
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    26   4.5  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 302 IASIKRYYFKGAKQLIQKNVHFNLLSIRRGTDNLNDYRLH*HIALSKDSFADLL*III 475
           +  +  YY K +  L    +   LL + +GT  LN Y     I L + +FA L+ +++
Sbjct: 726 LRQLASYYHKESNALFMVRIAQGLLYLGKGTMTLNPYHTERQI-LGQTAFAGLMTVVL 782


>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 253 YFD*YKLRRVPILLGVNCVNQALLFQGRK 339
           ++D YK R +   LG  C++   LFQG K
Sbjct: 91  FYDKYKDRPIARDLGTVCLHNPKLFQGNK 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,498
Number of Sequences: 5004
Number of extensions: 38343
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)