Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0650
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AL032647-2|CAA21689.1|  178|Caenorhabditis elegans Hypothetical ...    27   9.7  
AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z72512-1|CAA96663.2|  326|Caenorhabditis elegans Hypothetical
           protein R07B5.3 protein.
          Length = 326

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +1

Query: 226 SVRDFNSFDY-FD*YK----LRRVPILLGVNCVNQALLFQGRKATDTKKCTL*PFVYTS 387
           ++ DF +FDY FD       L  +P +  + C+++ L+F   K   T    + PF++ S
Sbjct: 10  NLTDFKTFDYQFDYVTIIVGLTTIPCIPSIYCLSKILIFYKNKYVSTSPQEIHPFIFRS 68


>AL032647-2|CAA21689.1|  178|Caenorhabditis elegans Hypothetical
           protein Y57A10B.2 protein.
          Length = 178

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 30/132 (22%), Positives = 64/132 (48%)
 Frame = +3

Query: 51  PSIFAWTQLKVLLRFNLTFIVSIRLLSTFEYIFISVTRCYSWKFQNYSDYRRYHKIKILS 230
           PS +A + +++   F   F + ++  ST  ++  S T   S    + S+Y++  K+K LS
Sbjct: 61  PSAYA-SIIRLFPFFQFFFFLEVQNCST-HFVTSSATASPSSSSSSSSEYKK--KVKRLS 116

Query: 231 PRF**F*LFRLI*TPTSSNSARRQLRQSSVTISRAQSN*YKKMYTLTFCLYVAELTTSTI 410
                      + + TSS+      R+ S+   + Q   +  + ++ F ++  ++T + +
Sbjct: 117 SN--------PLSSSTSSSEPSTSTRKRSIFHEKPQ---FVVLLSVNFSIFFPKITKN-V 164

Query: 411 IGYINISH*VRT 446
           +GYI+ SH V +
Sbjct: 165 LGYIHFSHSVNS 176


>AF003142-1|AAB54189.2|  389|Caenorhabditis elegans Hypothetical
           protein F57C9.6 protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 81  VLLRF-NLTFIVSIRLLSTFEYIFISVTRCYS 173
           VLLRF NLT I+++ L++  E+IFI     YS
Sbjct: 127 VLLRFTNLTTIMNVLLITMNEFIFICHPLRYS 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,415,861
Number of Sequences: 27780
Number of extensions: 198608
Number of successful extensions: 522
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)