Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0650
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38950.1 68417.m05519 kinesin motor family protein similar to...    29   3.9  
At5g22020.1 68418.m02562 strictosidine synthase family protein s...    28   5.1  
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate...    27   9.0  

>At4g38950.1 68417.m05519 kinesin motor family protein similar to
           AtNACK1 kinesin-like protein (GI:19979627) [Arabidopsis
           thaliana]; similar to kinesin-like protein NACK1
           (GI:19570247) [Nicotiana tabacum]
          Length = 836

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 54  SIFAWTQLKVLLRFNLTFIVSIRLLSTFEYIFISVTRCYSWKFQNYSDY 200
           SIFA+ Q      + +T I    +   F+YIF    R +S KF     Y
Sbjct: 94  SIFAYGQTSSGKTYTMTGITEFAVADIFDYIFQHEERAFSVKFSAIEIY 142


>At5g22020.1 68418.m02562 strictosidine synthase family protein
           similar to SP|P15324 Strictosidine synthase precursor
           (EC 4.3.3.2) {Rauvolfia mannii}; contains Pfam profile
           PF03088: Strictosidine synthase
          Length = 395

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 281 FQFCSASIASIKRYYFKGAK 340
           F FC   I S++RY+ KG K
Sbjct: 254 FVFCEGDIGSLRRYWLKGEK 273


>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
           CDPK-related contains TIGRFAM TIGR01557: myb-like
           DNA-binding domain, SHAQKYF class; contains Pfam
           PF00249: Myb-like DNA-binding domain; similar to CDPK
           substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
           crystallinum].
          Length = 626

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 302 IASIKRYYFKGAKQLIQKNVHFNLLSIRRGTDNLNDYRLH*HIAL 436
           + S  + Y  G+K  ++K    +  SIRR  D+  DY LH +++L
Sbjct: 74  VKSHLQMYRGGSKLTLEKPEESSSSSIRRRQDSEEDYYLHDNLSL 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,346,746
Number of Sequences: 28952
Number of extensions: 171115
Number of successful extensions: 313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)