Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0649
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    28   0.89 
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   1.6  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.1  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.3  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   6.3  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   6.3  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    25   8.3  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   8.3  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 361 SDELITRIVADFVIAAGDTTAYTSLWILFLLSNNTEILTXMND 489
           SDE I+     F+ A+ D T+    W+  LL+++ ++L  + +
Sbjct: 305 SDEEISLTFLSFLFASQDATSSAMTWLFQLLADHPDVLQKVRE 347


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 291 NFL-SDRDGIINGCLKFLHTFKFHRWQNST 205
           N+L + R+ +I+ C KFLHT K  R+   T
Sbjct: 508 NYLVNQREDLIHQCKKFLHTLKTARYYLET 537


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
 Frame = +1

Query: 160 CQENILNNYKIICFT-----RRILPTMEFKSVEKFQTSVDDSISIAQKIVY 297
           C EN      I+C T     RR    ME K +  +Q  + DSI +   I Y
Sbjct: 42  CSENTYEQALILCLTIMCEQRRSWTEMEEKLLHNYQGKIPDSIVVNWIITY 92


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -3

Query: 300 FVYNFLSDRDGIINGCLKFLHTFKFHRWQNSTGKAY---NFVVVENIFLTASENSNNNIS 130
           ++  +L+DRD I+ GC   +     H   + TGK +    F++   +F  +S  ++ ++S
Sbjct: 339 YLTRYLTDRDIILLGCCLNIVCMVIHITIHYTGKEFVQPYFIIYTLVFFGSSIANSPSVS 398


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 104 ALLKPTPEYEMLLLLFSEAVKKIFSTTTK 190
           AL+K  P Y   L+ FS+ ++ +FS + K
Sbjct: 458 ALVKVIPHYHNKLIDFSQVLQLVFSASEK 486


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 232 KSVEKFQTSVDDSISIAQKIV 294
           KS E F+TSV  SIS   K+V
Sbjct: 908 KSKEDFETSVSQSISFLYKLV 928


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = +1

Query: 271 ISIAQKIVYEMLHTKDAGDGLVKRLKDENMSDELI 375
           +++ ++++YE +HT+D     +K     N  D  +
Sbjct: 344 LNLTKELIYEFVHTRDGSQVAMKLFALANAKDRKV 378


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +1

Query: 310 TKDAGDGLVKRLKDENMSDELITRIVADFVIAAGDTTAYTSLWILFLLSN 459
           T+DA D  V     E MS   I  + A + + +GD     S W  FLL N
Sbjct: 81  TEDAMD--VYDTLQELMSINSINMLYAFYYMPSGDEEKLPSSWKSFLLEN 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,899
Number of Sequences: 5004
Number of extensions: 50890
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)