BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0649 (593 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_12080| Best HMM Match : p450 (HMM E-Value=0) 37 0.014 SB_8320| Best HMM Match : p450 (HMM E-Value=0) 33 0.13 SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 33 0.23 SB_25359| Best HMM Match : p450 (HMM E-Value=0) 32 0.30 SB_28895| Best HMM Match : p450 (HMM E-Value=0) 31 0.70 SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011) 29 3.7 SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) 28 4.9 SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19) 28 4.9 SB_53016| Best HMM Match : eRF1_1 (HMM E-Value=4.9) 28 6.5 SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15) 28 6.5 SB_7067| Best HMM Match : TrkA_C (HMM E-Value=10) 27 8.6 >SB_12080| Best HMM Match : p450 (HMM E-Value=0) Length = 522 Score = 36.7 bits (81), Expect = 0.014 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 10/92 (10%) Frame = +1 Query: 226 EFKSVEKFQTSVDDSISIAQKIVYEML-----HTKDAGDG-----LVKRLKDENMSDELI 375 E K+V+ F S+D K V E L DA + L + +++S I Sbjct: 263 ETKAVKMFYQSMDTLYDFTDKCVEEKLKEINERNVDADENSEAEFLTFLVASKSLSLSEI 322 Query: 376 TRIVADFVIAAGDTTAYTSLWILFLLSNNTEI 471 T + + ++AA DTT+ TSLW + L+ N E+ Sbjct: 323 TSNLVEILMAAVDTTSNTSLWACYCLAKNPEV 354 >SB_8320| Best HMM Match : p450 (HMM E-Value=0) Length = 1207 Score = 33.5 bits (73), Expect = 0.13 Identities = 16/55 (29%), Positives = 29/55 (52%) Frame = +1 Query: 298 EMLHTKDAGDGLVKRLKDENMSDELITRIVADFVIAAGDTTAYTSLWILFLLSNN 462 E+ ++D D L +++ + V D + A DTT+ T LW+L+++S N Sbjct: 978 ELESSEDKPDFFRFLLSSGKLTENDLLASVIDLLFAGVDTTSNTMLWVLYMMSQN 1032 >SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) Length = 4607 Score = 32.7 bits (71), Expect = 0.23 Identities = 18/57 (31%), Positives = 30/57 (52%) Frame = +1 Query: 307 HTKDAGDGLVKRLKDENMSDELITRIVADFVIAAGDTTAYTSLWILFLLSNNTEILT 477 H + DGL K LK+E+++DE + R+ A + + DT + LS + +LT Sbjct: 3417 HVCEVVDGLRKDLKNEDVADEFMLRMFARCIDSNQDTEVMPDILQKISLSEDERLLT 3473 >SB_25359| Best HMM Match : p450 (HMM E-Value=0) Length = 1084 Score = 32.3 bits (70), Expect = 0.30 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 355 NMSDELITRIVADFVIAAGDTTAYTSLWILFLLSNN 462 N+ E + V D + A DTTA T W L+L+ N Sbjct: 873 NLKKEDLLASVIDLIFAGSDTTANTFQWALYLMGKN 908 >SB_28895| Best HMM Match : p450 (HMM E-Value=0) Length = 492 Score = 31.1 bits (67), Expect = 0.70 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 9/90 (10%) Frame = +1 Query: 229 FKSVEKFQTSVDDSISIAQKIVYEMLHTKDAGDGLVKRLKD---------ENMSDELITR 381 FK + + + + +I K + H +D D +K D ++DE + Sbjct: 232 FKRIAELRDKLMGNILTFHKETFNENHIRDLTDAFLKAKLDIEREDKKAAGEVTDEEVAL 291 Query: 382 IVADFVIAAGDTTAYTSLWILFLLSNNTEI 471 ++ D +A +TT + WI+ L NN E+ Sbjct: 292 MMMDVYLAGLETTVTSLRWIIAYLMNNQEV 321 >SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011) Length = 782 Score = 28.7 bits (61), Expect = 3.7 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -2 Query: 586 GPKHMVGVNSGKNGATGYNLMASLTTFSRMG 494 GP H++ ++ KNG T +AS TT G Sbjct: 186 GPGHVINIHLNKNGVTSTQTVASHTTGGSTG 216 >SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) Length = 765 Score = 28.3 bits (60), Expect = 4.9 Identities = 20/58 (34%), Positives = 27/58 (46%) Frame = +1 Query: 232 KSVEKFQTSVDDSISIAQKIVYEMLHTKDAGDGLVKRLKDENMSDELITRIVADFVIA 405 K E + + D +A + Y L + D LV L DEN+SD L R AD +A Sbjct: 51 KPGESIDSFIQDLYRLADECNYSTLKEELIRDCLVVGLLDENLSDRL--RQKADLTLA 106 >SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19) Length = 461 Score = 28.3 bits (60), Expect = 4.9 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 14/96 (14%) Frame = +1 Query: 223 MEFKSVEKFQTSVDDSISIAQKIV--------------YEMLHTKDAGDGLVKRLKDENM 360 M+ S +KF + DD + I QK + EML K A L L + + Sbjct: 256 MDTPSYKKFCRAQDDVMRIGQKYIDMKMVELEEMAKSPEEMLEEK-AVPILTYMLAKKEL 314 Query: 361 SDELITRIVADFVIAAGDTTAYTSLWILFLLSNNTE 468 S I + +A DTT+ T +W+L+ L+ N + Sbjct: 315 SPHEINISAIEMFMAGVDTTSNTMVWLLYNLARNPD 350 >SB_53016| Best HMM Match : eRF1_1 (HMM E-Value=4.9) Length = 813 Score = 27.9 bits (59), Expect = 6.5 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +1 Query: 256 SVDDSISIAQKIVYEMLHTKDAGDGLVKRLKDENMSDE 369 S DD + + + +++H KD + + LKDEN S++ Sbjct: 187 SEDDLVHLKDESEDDLVHLKDESEDDLVHLKDENESED 224 Score = 27.9 bits (59), Expect = 6.5 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +1 Query: 256 SVDDSISIAQKIVYEMLHTKDAGDGLVKRLKDENMSDE 369 S DD + + + +++H KD + + LKDEN S++ Sbjct: 404 SEDDLVHLKDESEDDLVHLKDESEDDLVHLKDENESED 441 >SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15) Length = 802 Score = 27.9 bits (59), Expect = 6.5 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +1 Query: 367 ELITRIVADFVIAAGDTTAYTSLWILFLLSNNTEI 471 + T + F++ G +SLW +FL SN+T I Sbjct: 223 QAFTYLHGTFIVGFGYLPDRSSLWFIFLSSNSTSI 257 >SB_7067| Best HMM Match : TrkA_C (HMM E-Value=10) Length = 176 Score = 27.5 bits (58), Expect = 8.6 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = -1 Query: 398 TKSATILVINSSDIFSSFSLFTKPSPASFVCNISYTIF*AIEMESSTD 255 TKSA ++ +DI++S S PSP + ++ A+ E+ D Sbjct: 83 TKSAAVVSRELADIYASQSRKAPPSPPEVPLEVGTEVYIAVNEENLQD 130 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,693,074 Number of Sequences: 59808 Number of extensions: 341779 Number of successful extensions: 883 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 792 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 881 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1427401750 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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