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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0649
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12080| Best HMM Match : p450 (HMM E-Value=0)                        37   0.014
SB_8320| Best HMM Match : p450 (HMM E-Value=0)                         33   0.13 
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 33   0.23 
SB_25359| Best HMM Match : p450 (HMM E-Value=0)                        32   0.30 
SB_28895| Best HMM Match : p450 (HMM E-Value=0)                        31   0.70 
SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)                    29   3.7  
SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)                 28   4.9  
SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19)                  28   4.9  
SB_53016| Best HMM Match : eRF1_1 (HMM E-Value=4.9)                    28   6.5  
SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15)          28   6.5  
SB_7067| Best HMM Match : TrkA_C (HMM E-Value=10)                      27   8.6  

>SB_12080| Best HMM Match : p450 (HMM E-Value=0)
          Length = 522

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
 Frame = +1

Query: 226 EFKSVEKFQTSVDDSISIAQKIVYEML-----HTKDAGDG-----LVKRLKDENMSDELI 375
           E K+V+ F  S+D       K V E L        DA +      L   +  +++S   I
Sbjct: 263 ETKAVKMFYQSMDTLYDFTDKCVEEKLKEINERNVDADENSEAEFLTFLVASKSLSLSEI 322

Query: 376 TRIVADFVIAAGDTTAYTSLWILFLLSNNTEI 471
           T  + + ++AA DTT+ TSLW  + L+ N E+
Sbjct: 323 TSNLVEILMAAVDTTSNTSLWACYCLAKNPEV 354


>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1207

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +1

Query: 298  EMLHTKDAGDGLVKRLKDENMSDELITRIVADFVIAAGDTTAYTSLWILFLLSNN 462
            E+  ++D  D     L    +++  +   V D + A  DTT+ T LW+L+++S N
Sbjct: 978  ELESSEDKPDFFRFLLSSGKLTENDLLASVIDLLFAGVDTTSNTMLWVLYMMSQN 1032


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 307  HTKDAGDGLVKRLKDENMSDELITRIVADFVIAAGDTTAYTSLWILFLLSNNTEILT 477
            H  +  DGL K LK+E+++DE + R+ A  + +  DT     +     LS +  +LT
Sbjct: 3417 HVCEVVDGLRKDLKNEDVADEFMLRMFARCIDSNQDTEVMPDILQKISLSEDERLLT 3473


>SB_25359| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1084

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 355 NMSDELITRIVADFVIAAGDTTAYTSLWILFLLSNN 462
           N+  E +   V D + A  DTTA T  W L+L+  N
Sbjct: 873 NLKKEDLLASVIDLIFAGSDTTANTFQWALYLMGKN 908


>SB_28895| Best HMM Match : p450 (HMM E-Value=0)
          Length = 492

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
 Frame = +1

Query: 229 FKSVEKFQTSVDDSISIAQKIVYEMLHTKDAGDGLVKRLKD---------ENMSDELITR 381
           FK + + +  +  +I    K  +   H +D  D  +K   D           ++DE +  
Sbjct: 232 FKRIAELRDKLMGNILTFHKETFNENHIRDLTDAFLKAKLDIEREDKKAAGEVTDEEVAL 291

Query: 382 IVADFVIAAGDTTAYTSLWILFLLSNNTEI 471
           ++ D  +A  +TT  +  WI+  L NN E+
Sbjct: 292 MMMDVYLAGLETTVTSLRWIIAYLMNNQEV 321


>SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)
          Length = 782

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 586 GPKHMVGVNSGKNGATGYNLMASLTTFSRMG 494
           GP H++ ++  KNG T    +AS TT    G
Sbjct: 186 GPGHVINIHLNKNGVTSTQTVASHTTGGSTG 216


>SB_16736| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
          Length = 765

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 232 KSVEKFQTSVDDSISIAQKIVYEMLHTKDAGDGLVKRLKDENMSDELITRIVADFVIA 405
           K  E   + + D   +A +  Y  L  +   D LV  L DEN+SD L  R  AD  +A
Sbjct: 51  KPGESIDSFIQDLYRLADECNYSTLKEELIRDCLVVGLLDENLSDRL--RQKADLTLA 106


>SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19)
          Length = 461

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
 Frame = +1

Query: 223 MEFKSVEKFQTSVDDSISIAQKIV--------------YEMLHTKDAGDGLVKRLKDENM 360
           M+  S +KF  + DD + I QK +               EML  K A   L   L  + +
Sbjct: 256 MDTPSYKKFCRAQDDVMRIGQKYIDMKMVELEEMAKSPEEMLEEK-AVPILTYMLAKKEL 314

Query: 361 SDELITRIVADFVIAAGDTTAYTSLWILFLLSNNTE 468
           S   I     +  +A  DTT+ T +W+L+ L+ N +
Sbjct: 315 SPHEINISAIEMFMAGVDTTSNTMVWLLYNLARNPD 350


>SB_53016| Best HMM Match : eRF1_1 (HMM E-Value=4.9)
          Length = 813

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 256 SVDDSISIAQKIVYEMLHTKDAGDGLVKRLKDENMSDE 369
           S DD + +  +   +++H KD  +  +  LKDEN S++
Sbjct: 187 SEDDLVHLKDESEDDLVHLKDESEDDLVHLKDENESED 224



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 256 SVDDSISIAQKIVYEMLHTKDAGDGLVKRLKDENMSDE 369
           S DD + +  +   +++H KD  +  +  LKDEN S++
Sbjct: 404 SEDDLVHLKDESEDDLVHLKDESEDDLVHLKDENESED 441


>SB_5964| Best HMM Match : Peptidase_M28 (HMM E-Value=1.9e-15)
          Length = 802

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 367 ELITRIVADFVIAAGDTTAYTSLWILFLLSNNTEI 471
           +  T +   F++  G     +SLW +FL SN+T I
Sbjct: 223 QAFTYLHGTFIVGFGYLPDRSSLWFIFLSSNSTSI 257


>SB_7067| Best HMM Match : TrkA_C (HMM E-Value=10)
          Length = 176

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 398 TKSATILVINSSDIFSSFSLFTKPSPASFVCNISYTIF*AIEMESSTD 255
           TKSA ++    +DI++S S    PSP      +   ++ A+  E+  D
Sbjct: 83  TKSAAVVSRELADIYASQSRKAPPSPPEVPLEVGTEVYIAVNEENLQD 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,693,074
Number of Sequences: 59808
Number of extensions: 341779
Number of successful extensions: 883
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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