Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0649
(593 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23646-10|AAA28037.2| 242|Caenorhabditis elegans Hypothetical p... 31 0.47
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n... 31 0.82
Z92789-8|CAB07222.3| 495|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z68336-9|CAA92741.3| 495|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek (dictyo... 29 2.5
AF016448-8|AAW30665.1| 536|Caenorhabditis elegans Smek (dictyos... 29 2.5
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos... 29 2.5
AC006720-7|AAF60444.1| 511|Caenorhabditis elegans Cytochrome p4... 29 2.5
AF024499-6|AAB70354.1| 560|Caenorhabditis elegans Hypothetical ... 28 5.8
Z79600-6|CAB01879.2| 529|Caenorhabditis elegans Hypothetical pr... 27 7.6
>L23646-10|AAA28037.2| 242|Caenorhabditis elegans Hypothetical
protein F44E2.8 protein.
Length = 242
Score = 31.5 bits (68), Expect = 0.47
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 265 DSISIAQKIVYEMLHTKDAGDGLVKRLKDENMSDELITRIVADFVIAAGDTTAYTSLWI 441
DSI++ + ++Y H + D L +L D LI + D AAG YTS W+
Sbjct: 139 DSIAVLKHVIY---HKFNQNDELKVKLLDTG-DKILIQTYIGDTYFAAGANAKYTSTWV 193
>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 62
protein.
Length = 1256
Score = 30.7 bits (66), Expect = 0.82
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = +1
Query: 196 CFTRRILPTMEFKSVEKFQTSVDDSISIAQKIVYEMLHTKDAGDGLVKRLKDENMSDELI 375
C I F+ + + T DSI A+ + E LH A D + + +K + + +I
Sbjct: 831 CIQHAIKSRQNFQMINELTTQ-QDSIRTAETRLIEQLHINTATDDIARLIKQDGRTALVI 889
Query: 376 TRIVADF 396
++ D+
Sbjct: 890 VSLLHDY 896
>Z92789-8|CAB07222.3| 495|Caenorhabditis elegans Hypothetical
protein H02I12.8 protein.
Length = 495
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 325 DGLVKRLKDENMSDELITRIVADFVIAAGDTTAYTSLWILFLLSNNTEI 471
D L++ +K M + + V F+ DTT+ +W + LL N+ E+
Sbjct: 273 DLLLEMVKSGQMDETDVQAEVDTFMFEGHDTTSTGLMWAIHLLGNHPEV 321
>Z68336-9|CAA92741.3| 495|Caenorhabditis elegans Hypothetical
protein H02I12.8 protein.
Length = 495
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 325 DGLVKRLKDENMSDELITRIVADFVIAAGDTTAYTSLWILFLLSNNTEI 471
D L++ +K M + + V F+ DTT+ +W + LL N+ E+
Sbjct: 273 DLLLEMVKSGQMDETDVQAEVDTFMFEGHDTTSTGLMWAIHLLGNHPEV 321
>AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform b protein.
Length = 849
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 289 IVYEMLHTKDAGDGLVKRLKDENMSDEL--ITRIVADFVIAAGDTTAYTSLWILFLLSNN 462
+++ L T A + + ++++N+ +L + R+ D G T Y+ + LF+L+ N
Sbjct: 85 LLHMHLTTNSAREKMTLAIENDNVVTKLCEVFRMCEDIEHTEGLRTFYSIVKNLFMLNRN 144
Query: 463 TEILTXMNDND 495
T I ++DN+
Sbjct: 145 TVIEMLLDDNN 155
>AF016448-8|AAW30665.1| 536|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform c protein.
Length = 536
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 289 IVYEMLHTKDAGDGLVKRLKDENMSDEL--ITRIVADFVIAAGDTTAYTSLWILFLLSNN 462
+++ L T A + + ++++N+ +L + R+ D G T Y+ + LF+L+ N
Sbjct: 321 LLHMHLTTNSAREKMTLAIENDNVVTKLCEVFRMCEDIEHTEGLRTFYSIVKNLFMLNRN 380
Query: 463 TEILTXMNDND 495
T I ++DN+
Sbjct: 381 TVIEMLLDDNN 391
>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform a protein.
Length = 1085
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 289 IVYEMLHTKDAGDGLVKRLKDENMSDEL--ITRIVADFVIAAGDTTAYTSLWILFLLSNN 462
+++ L T A + + ++++N+ +L + R+ D G T Y+ + LF+L+ N
Sbjct: 321 LLHMHLTTNSAREKMTLAIENDNVVTKLCEVFRMCEDIEHTEGLRTFYSIVKNLFMLNRN 380
Query: 463 TEILTXMNDND 495
T I ++DN+
Sbjct: 381 TVIEMLLDDNN 391
>AC006720-7|AAF60444.1| 511|Caenorhabditis elegans Cytochrome p450
family protein 31A3 protein.
Length = 511
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 325 DGLVKRLKDENMSDELITRIVADFVIAAGDTTAYTSLWILFLLSNNTEI 471
D L++ +K M + + V F+ DTT+ +W + LL N+ E+
Sbjct: 289 DLLLEMVKSGQMDETDVQAEVDTFMFEGHDTTSTGLMWAIHLLGNHPEV 337
>AF024499-6|AAB70354.1| 560|Caenorhabditis elegans Hypothetical
protein F42G2.2 protein.
Length = 560
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 190 IICFTRRILPTMEFKSVEKFQTSVDDSISIAQKIVY 297
I CF +LP SVEKF+T + ++ + Q + Y
Sbjct: 360 IKCFEEFVLPLDRLLSVEKFKTMLTNAQIVGQLLKY 395
>Z79600-6|CAB01879.2| 529|Caenorhabditis elegans Hypothetical
protein F59C6.8 protein.
Length = 529
Score = 27.5 bits (58), Expect = 7.6
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 2 GTSRAQSGNFSPNLESEFYRFS---TDVILAVLQGNSALLKPTPEYEMLLLLFSEAVKKI 172
G SRA S F PN E EF + TD +L + ++ P P+ ++L+ + + +
Sbjct: 241 GESRAASPMFDPNTELEFRNQASAMTDCLLQYKEAAEFIVFPDPD-DILVPVLGKNYYEE 299
Query: 173 FSTTTKLY 196
F+ K++
Sbjct: 300 FTQAFKMF 307
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,405,282
Number of Sequences: 27780
Number of extensions: 268928
Number of successful extensions: 775
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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