Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0649
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   0.56 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.9  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               21   9.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.1  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 457 NNTEILTXMNDNDPYVKMLL 516
           N+ ++L   N+NDP++K L+
Sbjct: 131 NSCDLLKKRNENDPFLKRLI 150


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 457 NNTEILTXMNDNDPYVK 507
           N+ ++L   N+NDP++K
Sbjct: 10  NSCDLLKKRNENDPFLK 26


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 209 EFCQRWNLKVWRNFKHPLMIPSLSLRKLYTKCCTQ 313
           E   +W+  V       + +P L L K YT  CTQ
Sbjct: 190 EMIFQWDPDVPLVVDENIELPQLQLVKNYTADCTQ 224


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 211 ILPTMEFKSVEKFQTSVDDSISIAQ 285
           + PT E   V + + ++DD+  IAQ
Sbjct: 500 VSPTFEKPLVREIEKTIDDARFIAQ 524


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 123 QNTRCYCYCFL 155
           QN +CY  CF+
Sbjct: 53  QNLKCYLKCFM 63


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 92  EELLK*RQWKIYKTQIPS*ERS 27
           EEL+  R+WK Y+  + S  RS
Sbjct: 38  EELMGRRRWKQYQDTLYSGTRS 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,630
Number of Sequences: 438
Number of extensions: 3526
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)