Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0648
         (526 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8D294 Cluster: Valyl-tRNA synthetase; n=1; Wiggleswort...    36   0.57 
UniRef50_Q54I68 Cluster: Putative uncharacterized protein; n=1; ...    35   1.00 
UniRef50_Q4XSF6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.3  
UniRef50_A0BHW7 Cluster: Chromosome undetermined scaffold_109, w...    33   5.3  

>UniRef50_Q8D294 Cluster: Valyl-tRNA synthetase; n=1; Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis|Rep:
           Valyl-tRNA synthetase - Wigglesworthia glossinidia
           brevipalpis
          Length = 881

 Score = 35.9 bits (79), Expect = 0.57
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -1

Query: 187 YFISDNHKFKLILRFNLAFSFCGHRTSNRQTLNRKVVLNENTIIKKYNSCYNIFII 20
           Y+  +   F+L L  N+ + F  H+  +    N K++   N I +  N+CY +F I
Sbjct: 687 YYKYNIDNFRLDLVVNILYEFIWHQFCDWYIENSKIIFKNNIISRLNNTCYTLFFI 742


>UniRef50_Q54I68 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1035

 Score = 35.1 bits (77), Expect = 1.00
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = -1

Query: 196 YINYFISDNHKFKLILRFNLAFSFCGHRTSNRQTLNRKVVLNENTIIKKYNSCYNIFIIR 17
           YI  ++  N+KF +I RFN+  S      +    L  K++   N II  +NS  NIF ++
Sbjct: 134 YIFGYLDSNYKFNIIHRFNIPSSSSSSTATTTTKLTYKILDGPNIII--HNSNNNIFYVQ 191


>UniRef50_Q4XSF6 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 313

 Score = 32.7 bits (71), Expect = 5.3
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -2

Query: 486 NSLYLNNIKIYRNNNKLQSYKSFI*T*QRKVILTQKLKLSN*RYYYLNMIFN 331
           N+LY++ +K  +NNN+ Q Y  +I      V+ T  +  ++ +  Y+  IFN
Sbjct: 183 NTLYIDQLKKKKNNNECQYYFKYIHKLTDSVLFTNNIYFNSNKNIYVFDIFN 234


>UniRef50_A0BHW7 Cluster: Chromosome undetermined scaffold_109,
           whole genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_109,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 375

 Score = 32.7 bits (71), Expect = 5.3
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = -1

Query: 205 MSWYINYFISDNHKFKLILRFNLAFSFCGHRTSNRQTLNRKVVLNENTIIKKYNSCYNIF 26
           + W+ N     +  +++ILRF +AF       SN + LN K+ +NE+  +K  N   N+ 
Sbjct: 237 LDWHTNPLTLQDIFYEVILRFQVAFPNLNAYMSN-EKLNLKIQINESD-MKVINQILNVI 294

Query: 25  II 20
           ++
Sbjct: 295 VL 296


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 380,734,893
Number of Sequences: 1657284
Number of extensions: 6445691
Number of successful extensions: 15275
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15267
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33037407449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)