Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0648
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   3.0  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   4.0  

>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 70  HSKLLY--GLMSDDYLSDDHKN*TRD*IVKLV*IYDYH**NNLYTMTCYS*LIEINANVC 243
           H KLL   GL+S    + D++N + + I  L+  +DY     L  +T Y+ +I       
Sbjct: 653 HMKLLIQLGLLSVKVKNGDYENSSFETIENLIESFDYENSTPLSQLTKYTEIINDLITCL 712

Query: 244 NAFSY 258
           N+F Y
Sbjct: 713 NSFLY 717


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -1

Query: 193 INYFISDNHKFKLILRFNLAF--SFCGHRTSNRQTLNRKVVLNENTIIKKYN 44
           I Y IS  +   L++   ++F    C H  +  QT+   +++N+N+ +  +N
Sbjct: 167 IQYLISSCNLSPLVVSRLISFLPRICEHIENGSQTVLEILLMNQNSFLNNFN 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,208
Number of Sequences: 5004
Number of extensions: 30467
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)