BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= prgv0648 (526 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_04_0176 + 18749945-18749969,18750186-18750751,18750876-187509... 29 1.7 04_04_1615 + 34793511-34793660,34794013-34794070,34794163-347944... 28 5.3 >05_04_0176 + 18749945-18749969,18750186-18750751,18750876-18750944, 18752128-18752325,18752791-18752922,18753658-18753744, 18753845-18754288,18754644-18754811,18755129-18755359, 18755893-18756008,18756125-18756407 Length = 772 Score = 29.5 bits (63), Expect = 1.7 Identities = 13/35 (37%), Positives = 23/35 (65%) Frame = -2 Query: 474 LNNIKIYRNNNKLQSYKSFI*T*QRKVILTQKLKL 370 LN + +YRN+N+L+ +FI RK++ T+ + L Sbjct: 348 LNKLDLYRNSNELEEATAFIKENARKLLNTEDVTL 382 >04_04_1615 + 34793511-34793660,34794013-34794070,34794163-34794410, 34794485-34794601,34795309-34795369,34795860-34795954, 34796048-34796122,34796316-34796401,34796529-34796578, 34796667-34796707,34796784-34796948,34797204-34797271, 34797362-34797422,34797878-34798393 Length = 596 Score = 27.9 bits (59), Expect = 5.3 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%) Frame = +1 Query: 325 CFIKNHIQIIIPLVT*F--QFLC*YN 396 CFIKNH+ + L+ F QFLC Y+ Sbjct: 390 CFIKNHLIVYCRLILGFAGQFLCSYS 415 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,001,142 Number of Sequences: 37544 Number of extensions: 136326 Number of successful extensions: 203 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 202 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 203 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1154538620 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -