Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0648
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0176 + 18749945-18749969,18750186-18750751,18750876-187509...    29   1.7  
04_04_1615 + 34793511-34793660,34794013-34794070,34794163-347944...    28   5.3  

>05_04_0176 +
           18749945-18749969,18750186-18750751,18750876-18750944,
           18752128-18752325,18752791-18752922,18753658-18753744,
           18753845-18754288,18754644-18754811,18755129-18755359,
           18755893-18756008,18756125-18756407
          Length = 772

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -2

Query: 474 LNNIKIYRNNNKLQSYKSFI*T*QRKVILTQKLKL 370
           LN + +YRN+N+L+   +FI    RK++ T+ + L
Sbjct: 348 LNKLDLYRNSNELEEATAFIKENARKLLNTEDVTL 382


>04_04_1615 +
           34793511-34793660,34794013-34794070,34794163-34794410,
           34794485-34794601,34795309-34795369,34795860-34795954,
           34796048-34796122,34796316-34796401,34796529-34796578,
           34796667-34796707,34796784-34796948,34797204-34797271,
           34797362-34797422,34797878-34798393
          Length = 596

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 325 CFIKNHIQIIIPLVT*F--QFLC*YN 396
           CFIKNH+ +   L+  F  QFLC Y+
Sbjct: 390 CFIKNHLIVYCRLILGFAGQFLCSYS 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,001,142
Number of Sequences: 37544
Number of extensions: 136326
Number of successful extensions: 203
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)