Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0648
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59156-6|CAA41878.1|  160|Caenorhabditis elegans transposase pro...    28   3.6  
U73946-1|AAB18328.1|  452|Caenorhabditis elegans CeLIM-7 protein.      28   3.6  
AF067210-1|AAC16985.1|  452|Caenorhabditis elegans Lim domain fa...    28   3.6  
Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine re...    28   4.7  
Z73975-1|CAA98276.1|  282|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF039051-8|AAB94268.3|  309|Caenorhabditis elegans Serpentine re...    27   6.2  
Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>X59156-6|CAA41878.1|  160|Caenorhabditis elegans transposase
           protein.
          Length = 160

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 411 SI*NFCSFAVYCYSCIFL-YCLNTKNYIQIN 500
           S+ NFC F+V C+S IF  +  N   Y  IN
Sbjct: 130 SVDNFCFFSVVCFSLIFFSFMKNCYFYSTIN 160


>U73946-1|AAB18328.1|  452|Caenorhabditis elegans CeLIM-7 protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 130 SFCGHRTSNRQTLNRKVVLNENTIIKKYNSCYNI 29
           S CG +  ++Q    + VLNEN  +K    CY+I
Sbjct: 254 SSCGKKKKDKQATRVRTVLNENQ-LKILRDCYSI 286


>AF067210-1|AAC16985.1|  452|Caenorhabditis elegans Lim domain
           family protein 7 protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 130 SFCGHRTSNRQTLNRKVVLNENTIIKKYNSCYNI 29
           S CG +  ++Q    + VLNEN  +K    CY+I
Sbjct: 254 SSCGKKKKDKQATRVRTVLNENQ-LKILRDCYSI 286


>Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical
           protein T25E12.11 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = +3

Query: 249 IQLLQYVVKYLDYVNKISRL*IFMLMFY*KSYSDNNTVSYLVSISVLI*LFFVKSI*NFC 428
           +QL   +VK+  +    + L I ++M    S SDN  +   + I ++  +FF+ SI  F 
Sbjct: 53  VQLFYKIVKWSYWFCSTAVLMITLMMLLYASLSDNYILVKKIGILIMF-IFFMTSIFIFH 111

Query: 429 SFAVYCYSCIFLYCL--NTKNYIQINFEIKKK 518
                 +  +FL  +  + K ++ I+F  K +
Sbjct: 112 ILQQTIHLLLFLLAIINSLKYHLPIHFAFKSQ 143


>AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein6 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 423 FC-SFAVYCYSCIFLYCLNTKNYIQINFEIKKKKK 524
           FC S + +CY  +F+Y  N    ++ + +  K+K+
Sbjct: 168 FCTSISTFCYVSVFIYIRNANRNVEDSVQSNKRKQ 202


>Z73975-1|CAA98276.1|  282|Caenorhabditis elegans Hypothetical
           protein T06E8.1 protein.
          Length = 282

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 312 FTIC*FYLHNLNISLHTAVTECVTYIRINFNQSTVTCHG 196
           ++I  F+L ++   L+   T C  Y+RI+F   T+  HG
Sbjct: 5   WSIVVFFLLSILFILYNISTVCHYYMRISFYYFTILLHG 43


>AF039051-8|AAB94268.3|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein7 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 423 FCS-FAVYCYSCIFLYCLNTKNYIQINFEIKKKKK 524
           FC+  +  CY+C+F+   N    ++   + KK+K+
Sbjct: 182 FCTGISTVCYACVFMTIRNANKKVEDALKSKKRKQ 216


>Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical
           protein ZK662.5 protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 136 AFSFCGHRTSNRQTLNRKV--VLNENTIIKKYNSCYNIFI 23
           ++SF   R SN    N+ V  V   N ++K+YN C+  +I
Sbjct: 191 SYSFSNVRFSNLVCSNQNVYNVFATNGLVKRYNICFYSYI 230


>Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical
           protein B0035.6 protein.
          Length = 727

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 161 KFMIITNKIIYIP*HVTVD*LKLMRMYVTHSVTAVCSEIFRLCK*N*QIVNFYANVLLKI 340
           K   + ++I+  P  V  D  + +R ++  S      +IF  C  N +I  F  NV LK+
Sbjct: 134 KIARLLDEIVKNPEEVDDDVQEELRWHLLFSPVTTLLDIFTRCLKNFEITGFCLNVCLKV 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,327,947
Number of Sequences: 27780
Number of extensions: 167698
Number of successful extensions: 366
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)