Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0647
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   4.1  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    22   5.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   7.2  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 302 RESEPEVRQAAAYGCGVLAQFGDVQF 379
           ++  P VR+AAA   G LAQ  ++++
Sbjct: 177 QDDTPMVRRAAATKLGELAQVVELEY 202



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 293 NALRESEPEVRQAAA 337
           N L+++E EVR AAA
Sbjct: 291 NLLKDTEAEVRAAAA 305


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -3

Query: 62  PHYLHQLIVLLRPHHNLR 9
           P++ H+L     PHH ++
Sbjct: 93  PNWWHELETKFNPHHEIK 110


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 119  VSRHERM*YSAVRETNCTHPHYLHQLIVLLRPH 21
            VSR+    YS   E +       HQLIV   PH
Sbjct: 1366 VSRNNAGEYSCHVENDYGQDSVTHQLIVNAPPH 1398


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 272 YLDTSHSRTSE 240
           +LDTSH+R SE
Sbjct: 300 WLDTSHNRISE 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,232
Number of Sequences: 336
Number of extensions: 3104
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)