Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0647
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    60   3e-10
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    33   0.051
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    29   0.48 
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   2.6  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   5.9  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1095

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 31/81 (38%), Positives = 44/81 (54%)
 Frame = +2

Query: 263  YQDIFX*XMLNALRESEPEVRQAAAYGCGVLAQFGDVQFXXXXXXXXXXXXXIVAEPDAR 442
            Y+D F   +   ++ SEPE+RQAA+YG GV AQ G   +             ++  PDAR
Sbjct: 906  YKDHFLPYLAEGIQSSEPEIRQAASYGIGVAAQHGGELYAEICSSALPALFKMLELPDAR 965

Query: 443  SLEKINATENAISAVAKIIKY 505
              E+I ATEN   A+ KI ++
Sbjct: 966  DEEQIYATENICVAICKICRF 986



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 20/53 (37%), Positives = 32/53 (60%)
 Frame = +1

Query: 472  CYICRR*NYQIQYSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCELASSGH 630
            C ICR  + ++Q    + D+++T+W+  LPVT D ++AP+ Y  L EL    H
Sbjct: 981  CKICRFCSQRVQ----DLDKVVTYWINTLPVTHDEDDAPYAYTFLAELMEQNH 1029



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 17/49 (34%), Positives = 32/49 (65%)
 Frame = +3

Query: 105 LMSAYRDSFYPHFDTLLPHLVQLLAPNRPYSDRQXAICIFDDIIEFGGP 251
           ++  ++ +F P ++ LLP++   L+ N   + +Q A+C+ DD+IEF GP
Sbjct: 854 VLKIHKTAFCPFWERLLPYMDGFLSGNDTVA-KQWALCMMDDLIEFTGP 901


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1067

 Score = 32.7 bits (71), Expect = 0.051
 Identities = 24/81 (29%), Positives = 36/81 (44%)
 Frame = +2

Query: 266  QDIFX*XMLNALRESEPEVRQAAAYGCGVLAQFGDVQFXXXXXXXXXXXXXIVAEPDARS 445
            +D+F   M  AL +SE EVR  AAY  G+L QF                     +   R+
Sbjct: 893  RDVFSLFMA-ALEDSEGEVRSNAAYSMGLLCQFSTEDLSSEYLNILQKLQPFFTQEVFRT 951

Query: 446  LEKINATENAISAVAKIIKYN 508
                 A +NAI  ++++I +N
Sbjct: 952  -----ALDNAIGCISRLILHN 967


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 357 HSLVTYSLQPPAHELYLFWPPLSQ 428
           H L+ Y L PPAH+ YL W  L +
Sbjct: 527 HQLMLYDLYPPAHQTYL-WKALER 549


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 158 GQQRVEMR-IERIAVSRHERM*YSAVRETNCTHPHYLHQLIV-LLRPHHNL 12
           G+  +E + I R    RH R   S + +   T PH++  +I   L+  HNL
Sbjct: 625 GRDNIEKKGIFRTVSQRHRRQLSSLMHQLEATQPHFVRCIIPNNLKQPHNL 675


>SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +2

Query: 17   YDEVLEEQLADEDNEDVYSLSRVQHCITCAHVCLPRFVLSSFRHV 151
            Y+E+LE +  +++ E +  +  V   +  AH+ + RF+++    V
Sbjct: 869  YEELLEAEKIEKEEEKIERVVEVMKTLHPAHLSVFRFLIAHLGRV 913


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,121
Number of Sequences: 5004
Number of extensions: 47797
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)