Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0647
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    61   9e-10
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038...    60   2e-09
12_01_0005 + 34977-35516,35620-35777,35889-37192,37532-37626,387...    29   4.6  
11_01_0006 + 36564-37103,37207-37364,37476-38779,39119-39213,403...    29   4.6  
08_01_0028 - 204534-205040,205247-205440,205565-205745                 28   8.0  

>03_05_0816 + 27928812-27930059,27931007-27931111,27931197-27931262,
            27931337-27931501,27931671-27931745,27931829-27931983,
            27932234-27932369,27932454-27932523,27932602-27932729,
            27932838-27932894,27933326-27933511,27934031-27934123,
            27934488-27934573,27934668-27934734,27934873-27934939,
            27935016-27935152,27935618-27935709,27935849-27935915,
            27936058-27936078
          Length = 1006

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 28/88 (31%), Positives = 45/88 (51%)
 Frame = +2

Query: 245  RSCCVKYQDIFX*XMLNALRESEPEVRQAAAYGCGVLAQFGDVQFXXXXXXXXXXXXXIV 424
            R   V+Y D +   +L A     P++RQAA YG G+ A+FG   F             ++
Sbjct: 852  REAAVRYYDTYLPSLLEACTSENPDIRQAAVYGIGICAEFGGSAFRPHTGEALSRLYNVI 911

Query: 425  AEPDARSLEKINATENAISAVAKIIKYN 508
              P+A  L+   A +NA+SA+ KI +++
Sbjct: 912  KHPNALDLDNAMAYDNAVSALGKICQFH 939



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = +3

Query: 96  LHALMSAYRDSFYPHFDTLLPHLVQLLAPNRPYSDRQXAICIFDDIIE 239
           L  L+  ++  F P FD L  +L  +LA ++   +R+ AICIFDD+ E
Sbjct: 802 LGTLVKTFKTYFLPFFDELSVYLTPMLAKDKTVEERRIAICIFDDVAE 849



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 499  QIQYSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCEL 615
            Q     I+  +++  WL+ LP+  D  EA  V+  LC +
Sbjct: 937  QFHRDGIDASQVVPAWLSCLPIKNDLIEAKIVHEQLCTM 975


>07_03_0997 - 23203166-23203330,23203627-23203693,23203771-23203862,
            23204820-23204956,23205050-23205116,23205212-23205278,
            23205356-23205441,23206061-23206153,23206337-23206522,
            23207316-23207372,23207455-23207582,23207662-23207731,
            23207815-23207950,23208378-23208529,23208606-23208680,
            23208765-23208929,23209063-23209128,23209229-23209333,
            23209929-23210132,23210462-23211715
          Length = 1123

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 29/88 (32%), Positives = 46/88 (52%)
 Frame = +2

Query: 245  RSCCVKYQDIFX*XMLNALRESEPEVRQAAAYGCGVLAQFGDVQFXXXXXXXXXXXXXIV 424
            R   +KY D +   +L A  +   +VRQAA YG GV A+FG   F             ++
Sbjct: 921  RESALKYYDTYLPFLLEASNDENSDVRQAAVYGVGVCAEFGGHVFRPLVGEALSKLNNVI 980

Query: 425  AEPDARSLEKINATENAISAVAKIIKYN 508
              P+A+  + I A +NA+SA+ KI +++
Sbjct: 981  THPEAKHADNIMAYDNAVSALGKICQFH 1008



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = +3

Query: 96   LHALMSAYRDSFYPHFDTLLPHLVQLLAPNRPYSDRQXAICIFDDIIE 239
            L  L+  ++ SF P FD L  ++  +L  ++   +R+ AICIFDDI E
Sbjct: 871  LGTLIKTFKASFLPFFDELSVYITPMLGKDKTAEERRIAICIFDDIAE 918


>12_01_0005 +
           34977-35516,35620-35777,35889-37192,37532-37626,
           38738-38816,38938-38954
          Length = 730

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 5   TSEDYDEVLEEQLADEDNEDVYSLSRVQHCITCAHVCLPRFVLS 136
           T +D+ E LE     +D+E    L+   HC +C  V +P  V+S
Sbjct: 544 THKDFAEPLELPPCGKDDEAPPDLAAQLHCNSCKDVMMPPQVIS 587


>11_01_0006 +
           36564-37103,37207-37364,37476-38779,39119-39213,
           40324-40402,40524-40540
          Length = 730

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 5   TSEDYDEVLEEQLADEDNEDVYSLSRVQHCITCAHVCLPRFVLS 136
           T +D+ E LE     +D+E    L+   HC +C  V +P  V+S
Sbjct: 544 THKDFAEPLELPPCGKDDEAPPDLAAQLHCNSCKDVMMPPQVIS 587


>08_01_0028 - 204534-205040,205247-205440,205565-205745
          Length = 293

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 300 YVNLNRKCVKPRPTVAAC*HSLVTYSLQPPAHELYLFWPPLSQSR 434
           YV+    CV           +L+T  L PPAH+L+   P  S S+
Sbjct: 234 YVSQASSCVDVDQQAGIVDWNLLTSLLPPPAHQLFHHLPSASSSK 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,066,730
Number of Sequences: 37544
Number of extensions: 341419
Number of successful extensions: 876
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)