Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0647
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4)                   53   2e-07
SB_31985| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_49390| Best HMM Match : HEAT (HMM E-Value=2e-08)                    29   2.7  
SB_16942| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  28   8.2  

>SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4)
          Length = 248

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = +1

Query: 499 QIQYSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCEL 615
           +  +  IN D++I  WL+WLP+ ED EEA HVY  LC+L
Sbjct: 62  KFNHGNINVDDVIPTWLSWLPIIEDKEEATHVYGYLCDL 100



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +2

Query: 419 IVAEPDARSLEKINATENAISAVAKIIKYN 508
           ++ +P +RS E INATENAISAV KI K+N
Sbjct: 35  VINDPQSRSRENINATENAISAVTKICKFN 64


>SB_31985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 19/52 (36%), Positives = 33/52 (63%)
 Frame = +3

Query: 93  VLHALMSAYRDSFYPHFDTLLPHLVQLLAPNRPYSDRQXAICIFDDIIEFGG 248
           V+HA++  +++   P ++ LL     L+AP R  +D+Q  +C+FDD+IE  G
Sbjct: 25  VMHAVLGTHKEEAIPFWERLLQDFHALIAPERSEADKQWGLCVFDDVIEHFG 76


>SB_49390| Best HMM Match : HEAT (HMM E-Value=2e-08)
          Length = 433

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 296 ALRESEPEVRQAAAYGCGVLAQFG 367
           AL++S+ EVR  A YG G+LA  G
Sbjct: 393 ALKDSDDEVRSNATYGLGLLAMNG 416


>SB_16942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 373 TVCSRLRTSCTSFGRHCRRAGRTLS*KDQCN 465
           TVC  LR S   FG  C+++G+T S +D+C+
Sbjct: 14  TVCVCLRGS---FGGKCKKSGKTRSTEDKCS 41


>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 95  YSAVRETNCTHPHYLHQLIVLLRPHHNLRSC 3
           Y+   ET C  P+ +H L V +R  H L+ C
Sbjct: 10  YAMDEETPCQKPYCIHALAVHVRFVHRLKMC 40


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +1

Query: 61   GCVQFVSRTALYYMRSCLLTAIRSILISTRCCPILCSYLRLIGLILIASXP 213
            G    VSR +   + + L +A   +L+S    P +C++LR+ G+ ++ S P
Sbjct: 910  GVCMLVSRPSPPQVCTFLRSAGVCMLVSRPSPPQVCTFLRIAGVCMLVSRP 960



 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +1

Query: 61   GCVQFVSRTALYYMRSCLLTAIRSILISTRCCPILCSYLRLIGLILIASXP 213
            G    VSR +   + + L +A   +L+S    P +C++LR+ G+ ++ S P
Sbjct: 973  GVCMLVSRPSPPQVCTFLRSAGVCMLVSRPSPPQVCTFLRIAGVCMLVSRP 1023



 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +1

Query: 61   GCVQFVSRTALYYMRSCLLTAIRSILISTRCCPILCSYLRLIGLILIASXP 213
            G    VSR +   + + L +A   +L+S    P +C++LR+ G+ ++ S P
Sbjct: 1036 GVCMLVSRPSPPQVCTFLRSAGVCMLVSRPSPPQVCTFLRIAGVCMLVSRP 1086


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,885,384
Number of Sequences: 59808
Number of extensions: 392491
Number of successful extensions: 1018
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)