Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0647
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    45   6e-05
U23514-3|AAC46542.2|  421|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z72509-6|CAA96650.1|  223|Caenorhabditis elegans Hypothetical pr...    29   4.1  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
            family protein 3 protein.
          Length = 1092

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
 Frame = +2

Query: 287  MLNALRESEPEVRQAAAYGCGVLA-QFGDV-QFXXXXXXXXXXXXXIVAEPDARSLEKIN 460
            M   L +  PEVRQAA+YG GV+A  +  +  +             ++   DAR+ E+  
Sbjct: 899  MYKLLGDEYPEVRQAASYGFGVMAINYHQISDYRNEILSCLEPLAAMIQREDARATEEST 958

Query: 461  -ATENAISAVAKII 499
             ATENAISA AKII
Sbjct: 959  VATENAISAFAKII 972



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +3

Query: 57   MRMCTVCL-AYSTVLHALMSAYRDSFYPHFDTLLPHLVQLLAPNRPYSDRQXAICIFDDI 233
            M +   CL A S + H+LM  ++ + +     +    +QL+  ++ Y +RQ  +C+ DD 
Sbjct: 821  MELEASCLGAISDLTHSLMKEFKGTIFEGMINVFNCAIQLIEGSKQYFERQWGMCLLDDA 880

Query: 234  IEFG 245
            IEFG
Sbjct: 881  IEFG 884



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +1

Query: 529  EIITHWLTWLPVTEDTEEAPHVYALLCEL 615
            +++  +L+WLP   DTEE+P++Y  L EL
Sbjct: 984  KVVEMFLSWLPTYSDTEESPYIYTCLAEL 1012


>U23514-3|AAC46542.2|  421|Caenorhabditis elegans Hypothetical
           protein F48E8.7a protein.
          Length = 421

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 493 FSDGRYSIFSCIDLFKRACVRLCDNGGQKRYSSCAGGCK 377
           FSD   SIF C +L+ +  +RL  +G  ++  S    CK
Sbjct: 28  FSDETISIFPCYNLYPKKSLRLSVSGNSEKLKSINLNCK 66


>Z72509-6|CAA96650.1|  223|Caenorhabditis elegans Hypothetical
           protein F32G8.6 protein.
          Length = 223

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 2   GTSEDYDEVLEEQLADEDNEDVYSLSRVQHCITCAHVCLP 121
           G  +  DE+L E + DED++++  +  ++    C H  +P
Sbjct: 80  GYDDQLDELLNEAVFDEDHDEMVIVKDIEMFSLCEHHLVP 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,334,664
Number of Sequences: 27780
Number of extensions: 287384
Number of successful extensions: 737
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)