Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0647
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.3  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   8.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   8.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -3

Query: 119  VSRHERM*YSAVRETNCTHPHYLHQLIVLLRPH 21
            V R +   YS   E    H    HQLIV   PH
Sbjct: 1336 VDRTDAGEYSCYVENTFGHDTVTHQLIVHAPPH 1368


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 97  YMRSCLLTAIRSILISTRCCPILCSYLRLIGLILIA 204
           Y+R+C+  ++R I  +T    IL   + L G  L A
Sbjct: 380 YLRACITESLRLIPTTTCIARILDEPIELSGYRLTA 415


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = -1

Query: 439 CVRLCDNGGQKRYSSCAGGCKLYVTKLC*HAATVGRGLTHFRFRFT*CIQHXL 281
           C+R C    ++    CA   K+Y      H A    G +  + R   C+ H +
Sbjct: 106 CMRKCP---RRHRPVCASNGKIYANHCELHRAACHSGSSLTKSRLMRCLHHDI 155


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 56  NEDVYSLSRVQHCITC 103
           NE  YS +   HC+ C
Sbjct: 182 NEHTYSETGPSHCVVC 197


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 426 QSRTHALLKRSMQLKMLYLPSLKLSNT 506
           Q+R HALL  ++ +K L +   K+ +T
Sbjct: 59  QTREHALLAFTLGVKQLIVGVNKMDST 85


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 426 QSRTHALLKRSMQLKMLYLPSLKLSNT 506
           Q+R HALL  ++ +K L +   K+ +T
Sbjct: 75  QTREHALLAFTLGVKQLIVGVNKMDST 101


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 426 QSRTHALLKRSMQLKMLYLPSLKLSNT 506
           Q+R HALL  ++ +K L +   K+ +T
Sbjct: 132 QTREHALLAFTLGVKQLIVGVNKMDST 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,588
Number of Sequences: 438
Number of extensions: 3331
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)