Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0647
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    64   8e-11
At3g22740.1 68416.m02868 homocysteine S-methyltransferase 3 (HMT...    28   6.7  
At4g29600.1 68417.m04219 cytidine deaminase, putative / cytidine...    27   8.9  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
            protein contains Pfam profile: PF03130 PBS lyase
            HEAT-like repeat
          Length = 1116

 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 33/88 (37%), Positives = 45/88 (51%)
 Frame = +2

Query: 245  RSCCVKYQDIFX*XMLNALRESEPEVRQAAAYGCGVLAQFGDVQFXXXXXXXXXXXXXIV 424
            R    KY D +   +L A  +  PEVRQAA YG GV A+FG   F             ++
Sbjct: 915  REAAFKYYDTYLPFVLEACNDESPEVRQAAVYGLGVCAEFGGSVFKPLIGEALSRLNVVI 974

Query: 425  AEPDARSLEKINATENAISAVAKIIKYN 508
              P+AR  E   A +NA+SAV KI +++
Sbjct: 975  QLPNARQSENAMAYDNAVSAVGKICQFH 1002



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +3

Query: 93   VLHALMSAYRDSFYPHFDTLLPHLVQLLAPNRPYSDRQXAICIFDDIIE 239
            +L  L+  ++ SF P FD L  +L  +   ++   +R+ AICIFDD+ E
Sbjct: 864  ILGTLVKTFKASFLPFFDELSSYLTPMWGRDKTAEERRIAICIFDDVAE 912



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 499  QIQYSQINRDEIITHWLTWLPVTEDTEEAPHVYALLCEL 615
            Q     I+  +++  WL  LP++ D  EA  V+  LC +
Sbjct: 1000 QFHRDSIDSSQVLPAWLNCLPISNDVLEAKVVHDQLCSM 1038


>At3g22740.1 68416.m02868 homocysteine S-methyltransferase 3 (HMT-3)
           identical to homocysteine S-methyltransferase HMT-3
           [Arabidopsis thaliana] GI:9966515; similar to
           homocysteine S-methyltransferase AtHMT-2 (GI:6685163)
           [Arabidopsis thaliana]; similar to selenocysteine
           methyltransferase GB:P56707 from [Astragalus bisulcatus]
          Length = 347

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 74  NCTHPHYLHQLIVLLR 27
           NCT P Y+H LI+ LR
Sbjct: 250 NCTAPRYIHALIISLR 265


>At4g29600.1 68417.m04219 cytidine deaminase, putative / cytidine
           aminohydrolase, putative identical to cytidine deaminase
           7 (CDA7) [Arabidopsis thaliana] GI:3818574, cytidine
           deaminase homolog DesC [Arabidopsis thaliana]
           GI:4836445; similar to cytidine deaminase (CDD)
           [Arabidopsis thaliana] GI:3046700; contains Pfam profile
           PF00383: Cytidine and deoxycytidylate deaminase
           zinc-binding
          Length = 307

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +3

Query: 162 LVQLLAPNRPYSDRQXAICIFDDIIEFGGP 251
           LV  LA N     RQ A+ I  D IEFG P
Sbjct: 81  LVTNLALNSEKGLRQLAVAISSDCIEFGAP 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,248,659
Number of Sequences: 28952
Number of extensions: 258375
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)