Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0646
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo...    27   1.4  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   2.5  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   5.7  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   5.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   5.7  
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    25   7.5  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    24   9.9  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    24   9.9  

>SPBC1105.18c ||SPBC887.21c|peptide release
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = -1

Query: 164 KNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSG 12
           K FISV    F  L + N  HT + S     Y  E L   D+    I   G
Sbjct: 11  KTFISVRLNAFSCLAELNFRHTWYCSKKETPYQLERLQEEDIEETFICGKG 61


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 128 ILGDFNSHHTSWGSSVSNSYGYELLDILDMY 36
           +L  FN H  SW  + S +  Y++ ++L+ Y
Sbjct: 876 VLFQFNRHARSWIQNSSKAIPYQVKNLLESY 906


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 165 NFIEDLQGGMRDIDRDKTDTINNSCNDRKALLCEGRGKEEKVLEFLMSRHTPPYPSA 335
           N +  L+  M   + D TDT+NN  N++  ++      E+K L+ + S   P  P A
Sbjct: 701 NDMASLEAPMMSHNTD-TDTLNNKLNEKDNVVF-----EDKTLQHVASEIVPNLPPA 751


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 398 NLAKARFCIQNPWLFVLKRRQG*WIWWCMPTH 303
           ++ +  FC  +P+  V   R G  I+W M TH
Sbjct: 230 SVKQVNFCNDSPYNLVSCSRDGSIIFWDMRTH 261


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 167 IKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC 27
           + +FIS  P   +   D +S    W S +     YE ++ L +Y LC
Sbjct: 237 VLSFISRDPSTQVPYKDMSSCEALWISRMDELSNYERIEQLALYLLC 283


>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +3

Query: 93  PRCVMRVEITQNHERPRKN*NEVFNFIEDLQGG 191
           P C+ ++   + HE  ++N   + +++ D+ GG
Sbjct: 103 PNCIRKIRTIEKHEALKQN---IGDYVVDISGG 132


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 358 YSCLREDRADGYGGVCLLIRNSSTFSSFPLP 266
           +S + E   D    V   ++N   FSS+PLP
Sbjct: 397 HSSITEKTRDIAKNVATWLKNGENFSSWPLP 427


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = -1

Query: 185 LQIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSN-----SYGYELLDILD-MYSLCI 24
           L+IF +  NFI+ + +  +   + +S + SW   +SN     +Y   L D +D + S C 
Sbjct: 499 LRIFQKNGNFITPITQALLNACEIDSIYQSW-EDISNFVLFDNYTSTLKDPIDSILSFCK 557

Query: 23  LN 18
           LN
Sbjct: 558 LN 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,113
Number of Sequences: 5004
Number of extensions: 34752
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)