Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0646
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1110 - 34182943-34182963,34183122-34183301,34184201-341845...    29   1.4  
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502...    27   5.6  
03_02_0849 - 11768191-11771412                                         27   7.4  
01_02_0074 + 10869546-10871373,10871449-10872077                       27   7.4  
06_01_0513 - 3701148-3701757,3702654-3703228                           27   9.8  
03_05_0290 - 22791338-22791925,22792012-22793196,22793835-227939...    27   9.8  

>02_05_1110 -
           34182943-34182963,34183122-34183301,34184201-34184546,
           34184794-34184846
          Length = 199

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 345 LKHE*PGILNTKSGFSQVSDREN 413
           LKH   GI NTKS + +V  REN
Sbjct: 166 LKHNSSGICNTKSAYKEVVKREN 188


>01_01_0660 +
           5029070-5029177,5029303-5029398,5029494-5029556,
           5029836-5029913,5030446-5030614,5030797-5031180,
           5031959-5032042,5032143-5032288,5032810-5033070,
           5033147-5033328,5033421-5033586,5033650-5033703,
           5034702-5034965,5035088-5035303,5035388-5035540,
           5035630-5035827
          Length = 873

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 242 IAAIVDGICFVSIYVPHPSLQIFNEIKNFISVLPRPFMIL 123
           IA +++  C +       +L I+NEI+NFI+V+    + L
Sbjct: 820 IAGVLERACLMLRPSCAENLPIYNEIENFIAVIKNQILAL 859


>03_02_0849 - 11768191-11771412
          Length = 1073

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 234 SCNDRKALLCEGRGKE-EKVLEFLMSRHTPPYP 329
           +C+D  + +  GR KE E+V++ L+S HT P P
Sbjct: 168 ACHDESSQIF-GRAKEKEEVVQALLSDHTIPLP 199


>01_02_0074 + 10869546-10871373,10871449-10872077
          Length = 818

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 397 TWLKPDFVFKIPGYS-CLREDRADGYGG 317
           TW K ++V KIP  S  LR D   GY G
Sbjct: 616 TWYKNEYVSKIPMTSMALRPDAEHGYPG 643


>06_01_0513 - 3701148-3701757,3702654-3703228
          Length = 394

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 200 VPHPSLQIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYG 66
           V  P+   FN+  NF+ + P P     D N ++    + ++  YG
Sbjct: 82  VVDPTFDFFNDHNNFLGMPPPPVQQADDHNMNNVVADAGMNYYYG 126


>03_05_0290 -
           22791338-22791925,22792012-22793196,22793835-22793904,
           22795918-22795979
          Length = 634

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +3

Query: 216 TDTINNSCNDRKALLCEGRGKEEKVLEFLMSRHTPPYPSALSSLKHE*PGILNTKSGFSQ 395
           +D  N SC+D+ +   +G    +K+L  L S  T    ++ SS   E PG LN +   S 
Sbjct: 566 SDINNKSCDDKSSSKSKGSLMPKKILSKLWSGKTNASENS-SSDTSESPGSLNPEEVKST 624

Query: 396 VS 401
            S
Sbjct: 625 TS 626


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,923,532
Number of Sequences: 37544
Number of extensions: 217229
Number of successful extensions: 446
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)