Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0646
(464 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 46 2e-05
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 46 3e-05
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 45 6e-05
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 44 8e-05
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 41 7e-04
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 41 7e-04
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 40 0.002
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 39 0.003
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 39 0.003
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 38 0.007
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 36 0.027
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 36 0.036
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 29 2.3
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 29 4.1
BT023026-1|AAY55442.1| 226|Drosophila melanogaster IP08534p pro... 28 7.1
AE014296-3439|AAF51650.1| 226|Drosophila melanogaster CG3288-PA... 28 7.1
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 27 9.4
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 27 9.4
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 27 9.4
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 27 9.4
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = -1
Query: 221 ICFVSIYVPHPSLQIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILD 42
I V+ Y+P + ++I + L ++LGD NS WGS +N+ G ++ ++
Sbjct: 101 INIVNAYIPPSQIFSSSDISEILQNLNGSTILLGDLNSWSPLWGSPRTNTRGKKIETVIL 160
Query: 41 MYSLCILNSGSPT 3
SL +LN GSPT
Sbjct: 161 ENSLIVLNDGSPT 173
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Frame = -1
Query: 236 AIVDGICFVSIYVP-HPSLQIFNE-IKNFISVLP--RPFMILGDFNSHHTSWGSSVSNSY 69
A + GI F S Y P S + F + ++ ++ RP +I GD N+ T WGS +SN+
Sbjct: 82 AKIRGIHFYSCYAPPSDSPEQFEDMLEKLVNHASGRRPTVIGGDLNAWATEWGSRISNTR 141
Query: 68 GYELLDILDMYSLCILNSG-SPT 3
G ++D +++ L +LN G PT
Sbjct: 142 GRAVIDAMNLLDLVLLNDGFKPT 164
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -1
Query: 209 SIYVPHPSLQIFNE-IKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYS 33
S Y+ P+ I N+ + N ++ P +I GDFN H WGS +N G +D
Sbjct: 101 STYIS-PTKNITNQTLHNTFNIQQTPSLITGDFNGWHHPWGSPTTNKRGKITHRFIDNMH 159
Query: 32 LCILNSGSPT 3
L +LN SPT
Sbjct: 160 LILLNDKSPT 169
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/82 (28%), Positives = 40/82 (48%)
Frame = -1
Query: 248 SVIAAIVDGICFVSIYVPHPSLQIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSY 69
+VI + I F ++Y P +E K+ + F++ GD+N+ H WG+ SN
Sbjct: 94 AVIETALGPISFGAVYCPPRFAWTTDEFKDILEEFQTKFIVAGDWNASHWLWGAGRSNQR 153
Query: 68 GYELLDILDMYSLCILNSGSPT 3
G L +++ + L +G PT
Sbjct: 154 GIALANLVLNSEVDSLATGGPT 175
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = -1
Query: 230 VDGICFVSIYVPHPSLQIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLD 51
V + ++Y+P I ++ K+ + L F+ GD+N+ H WG+ S G L +
Sbjct: 101 VGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKMLQE 160
Query: 50 ILDMYSLCILNSGSPT 3
++ +L +G PT
Sbjct: 161 VIAHGQYQVLATGEPT 176
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = -1
Query: 230 VDGICFVSIYVPHPSLQIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLD 51
V + ++Y+P I ++ K+ + L F+ GD+N+ H WG+ S G L +
Sbjct: 101 VGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKMLQE 160
Query: 50 ILDMYSLCILNSGSPT 3
++ +L +G PT
Sbjct: 161 VIAHGQYQVLATGEPT 176
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = -1
Query: 242 IAAIVDGICFVSIYVPHPSLQIFNE-IKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYG 66
+A + + F +IY PS +I + I + +++ GD+N+ H WG + ++ G
Sbjct: 97 VATGLGDLQFSAIYCS-PSTRIEERHFTDIIRACGQRYLVGGDWNARHWLWGDTCNSPRG 155
Query: 65 YELLDILDMYSLCILNSGSPT 3
EL + L + IL +GSPT
Sbjct: 156 RELAEALSVTGAKILATGSPT 176
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -1
Query: 155 ISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPT 3
IS + F+I GDFNS H +W + +N +G L ++ D+ IL PT
Sbjct: 149 ISQINGNFLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPT 199
Score = 34.3 bits (75), Expect = 0.082
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 406 LSETWLKPDFVFKIPGYSCLREDRADGY-GGVCLLIRNSSTFSSFP-LPSH 260
++ETWL F IP Y+ R DR + GGV + + N+ P + SH
Sbjct: 43 INETWLTHSDRFNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSH 93
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -1
Query: 155 ISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPT 3
IS + F+I GDFNS H +W + +N +G L ++ D+ IL PT
Sbjct: 97 ISQINGNFLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPT 147
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = -1
Query: 221 ICFVSIYVPHPSLQIFNEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLD--I 48
+ ++Y P + + +F L F+ GD+N+ HT WGS + N G +L I
Sbjct: 103 LTLAAVYCPPRFTVLEAQFLDFFQALGPHFIAAGDYNAKHTHWGSRLVNPKGKQLYKTII 162
Query: 47 LDMYSLCILNSGSPT 3
L ++ GSPT
Sbjct: 163 KATNKLDHVSPGSPT 177
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 35.9 bits (79), Expect = 0.027
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = -1
Query: 209 SIYVPHPSLQIF-NEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDM-- 39
++Y P P I ++ F + L F+ GD+N+ HT WGS + + G +L + L
Sbjct: 106 AVYCP-PRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVSPKGKQLYNALTKPE 164
Query: 38 YSLCILNSGSPT 3
L ++ G PT
Sbjct: 165 NKLDYVSPGKPT 176
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 415 IFSLSETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRN 296
+ LSET L F IPGY + DG +GG +LIRN
Sbjct: 32 VMLLSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRN 73
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 35.5 bits (78), Expect = 0.036
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = -1
Query: 209 SIYVPHPSLQIF-NEIKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDM-- 39
++Y P P I ++ F + L F+ GD+N+ HT WGS + G +L + L
Sbjct: 106 AVYCP-PRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVTPKGKQLYNALTKPE 164
Query: 38 YSLCILNSGSPT 3
L ++ G PT
Sbjct: 165 NKLDYVSPGKPT 176
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 415 IFSLSETWLKPDFVFKIPGYSCLREDRADG--YGGVCLLIRN 296
+ LSET L F IPGY + DG +GG +LIRN
Sbjct: 32 VMLLSETHLTNKNNFHIPGYLFYGTNHPDGKAHGGTGILIRN 73
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Frame = -1
Query: 221 ICFVSIYVPHPSLQI----FNEIKNFISVL---PRPFMILGDFNSHHTSWGSSVSNSYGY 63
I S+Y P PSL F ++ NF ++ GD+N+ H WG + G
Sbjct: 125 IVIASVYCP-PSLSWSPHHFTDVLNFAEKTMGGQTKLILCGDWNAKHRQWGCIRACQRGA 183
Query: 62 ELLDILDMYSLC-ILNSGSPT 3
L D + S+ I+ +GS T
Sbjct: 184 ALYDAIQADSMAEIVATGSAT 204
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Frame = -1
Query: 221 ICFVSIYVPHPSLQI----FNEIKNFISVL---PRPFMILGDFNSHHTSWGSSVSNSYGY 63
I S+Y P PSL+ F ++ NF F++ GD+N+ H WG + + G
Sbjct: 113 IVIASVYCP-PSLRWLPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGT 171
Query: 62 ELLDILDMYSLC-ILNSGSPT 3
L + + S I+ +G T
Sbjct: 172 ALYEAVQADSTAEIIATGCAT 192
>BT023026-1|AAY55442.1| 226|Drosophila melanogaster IP08534p
protein.
Length = 226
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1
Query: 287 LFFLPSPFT**CFSVIAAIVDGICFVSIYVPH 192
+FF+P+ FT + +I ++ +CFV +Y+ H
Sbjct: 6 IFFIPTLFT---YLLIGLLIVILCFVVVYISH 34
>AE014296-3439|AAF51650.1| 226|Drosophila melanogaster CG3288-PA
protein.
Length = 226
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1
Query: 287 LFFLPSPFT**CFSVIAAIVDGICFVSIYVPH 192
+FF+P+ FT + +I ++ +CFV +Y+ H
Sbjct: 6 IFFIPTLFT---YLLIGLLIVILCFVVVYISH 34
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = -1
Query: 221 ICFVSIYVPHPSLQI----FNEIKNFISVL---PRPFMILGDFNSHHTSWGSSVSNSYGY 63
I S+Y P PSL F ++ NF F++ GD+N+ H WG + + G
Sbjct: 113 IVIASVYCP-PSLSWSPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGT 171
Query: 62 ELLD 51
L +
Sbjct: 172 ALYE 175
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = -1
Query: 221 ICFVSIYVPHPSLQI----FNEIKNFISVL---PRPFMILGDFNSHHTSWGSSVSNSYGY 63
I S+Y P PSL F ++ NF F++ GD+N+ H WG + + G
Sbjct: 113 IVIASVYCP-PSLSWSPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGT 171
Query: 62 ELLD 51
L +
Sbjct: 172 ALYE 175
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = -1
Query: 221 ICFVSIYVPHPSLQI----FNEIKNFISVL---PRPFMILGDFNSHHTSWGSSVSNSYGY 63
I S+Y P PSL F ++ NF F++ GD+N+ H WG + + G
Sbjct: 75 IVIASVYCP-PSLSWSPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGT 133
Query: 62 ELLD 51
L +
Sbjct: 134 ALYE 137
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = -1
Query: 221 ICFVSIYVPHPSLQI----FNEIKNFISVL---PRPFMILGDFNSHHTSWGSSVSNSYGY 63
I S+Y P PSL F ++ NF F++ GD+N+ H WG + + G
Sbjct: 113 IVIASVYCP-PSLSWSPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGT 171
Query: 62 ELLD 51
L +
Sbjct: 172 ALYE 175
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,675,547
Number of Sequences: 53049
Number of extensions: 376499
Number of successful extensions: 830
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1559812275
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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