Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0646
         (464 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   2.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   6.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = -2

Query: 427 FNPFIFSLSETWLKPDFVFKIPGYSCLREDRAD 329
           +NP ++ +S    +     K P  +C  E  +D
Sbjct: 326 YNPIVYGISHPKYRAALFAKFPSLACAAEPSSD 358


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 403 SETWLKPDFVFKIPGY 356
           ++ WL+PD++F +  Y
Sbjct: 225 TKIWLRPDWLFNLTKY 240


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/38 (18%), Positives = 20/38 (52%)
 Frame = -1

Query: 233 IVDGICFVSIYVPHPSLQIFNEIKNFISVLPRPFMILG 120
           +V  +C+ + +V HP  ++   +   + ++    M++G
Sbjct: 159 VVAEVCYFTAHVTHPRHRLCVFVAGVVFIVSGLLMLVG 196


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 386 ARFCIQNPWLFVLKRR 339
           A FC   PW FV+ R+
Sbjct: 289 ASFCKAFPWHFVVDRQ 304


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 382 DFVFKIPGYSCLRED 338
           +F  +IPG+S L +D
Sbjct: 251 EFAKRIPGFSLLAQD 265


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = +3

Query: 210 DKTDTINNSCNDRKALLCEGRGKEEKVLEFLMSRHTPPYPSALSSLKHE*PGILNTKSGF 389
           D   + ++  N+   LL + R      L+  ++ H     SAL       PG+  + +GF
Sbjct: 252 DVESSTSSGGNEDANLLLKARLNPNSSLQPSLASHHSHLSSALGRSACHSPGVYPSTAGF 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,943
Number of Sequences: 438
Number of extensions: 2390
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)