Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0646
         (464 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 / 3-keto...    28   2.7  
At1g19790.1 68414.m02475 lateral root primordium (LRP) protein-r...    28   2.7  
At5g01660.1 68418.m00082 kelch repeat-containing protein similar...    27   6.2  
At1g45207.2 68414.m05186 remorin family protein Since this genom...    27   6.2  
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    27   8.3  
At3g03140.1 68416.m00310 expressed protein                             27   8.3  
At1g51560.1 68414.m05803 expressed protein                             27   8.3  
At1g08800.1 68414.m00979 expressed protein weak similarity to SP...    27   8.3  

>At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 /
           3-ketoacyl-CoA thiolase 1 (PKT1) identical to
           3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
           GI:3169568
          Length = 457

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 300 LMSRHTPPYPSALSSLKHE*PGILNTKSGFSQVS 401
           ++ RH  P  S+ SSLKHE P +L+  +  S+VS
Sbjct: 10  ILLRHLNPVSSSNSSLKHE-PSLLSPVNCVSEVS 42


>At1g19790.1 68414.m02475 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 345

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 183 QGGMRDIDRDKTDTINNSCNDRKALLC 263
           +GG  D D DK D  N+SC    AL C
Sbjct: 181 RGGGDDDDDDKEDEKNDSCGGGSALAC 207


>At5g01660.1 68418.m00082 kelch repeat-containing protein similar to
           SP|P57790 Kelch-like ECH-associated protein 1 (Cytosolic
           inhibitor of Nrf2) {Rattus norvegicus}; contains Pfam
           profile PF01344: Kelch motif
          Length = 621

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 230 VDGICFVSIYVPHPSLQIFNEIK 162
           +DG C VS  +PH   Q+ +E+K
Sbjct: 247 IDGSCLVSSPLPHTISQLMHEVK 269


>At1g45207.2 68414.m05186 remorin family protein Since this genomic
           sequence region is unfinished, the annotated gene may be
           missing a stop codon or start codon
          Length = 555

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 195 RDIDRDKTDT-INNSCNDRKALLCEGRGKEE 284
           +D+D DK  T   NSCN RK+   +   KEE
Sbjct: 78  KDLDLDKRGTGWKNSCNSRKSNKVKAAWKEE 108


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
           to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 146 LPRPFMILGDFNSHHTSWGSSVSNSYGY 63
           LP    +LG   S+ T W SS S ++GY
Sbjct: 73  LPSHLSLLGSL-SYATHWSSSTSRAFGY 99


>At3g03140.1 68416.m00310 expressed protein
          Length = 769

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 165 NFIEDLQGGMRDIDRDKTDTINNSCNDRKALLCEGRGKEEKVLEFLMSRHTPPYPSALSS 344
           NF+ED++    + + D +D   ++ +D   L   GR  E +      SRHT     + SS
Sbjct: 301 NFLEDMESDYSESETDSSDMEEDTDDDIPLLSGAGRHSERR---NTFSRHTSGEDESTSS 357


>At1g51560.1 68414.m05803 expressed protein
          Length = 392

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -2

Query: 442 HIINTFNPFIFSLSETWLKP--DFVFKIPGYSCLREDRADGYGGV 314
           H I +F+P          +P    V +IPG+SCL   R   +G V
Sbjct: 192 HPIFSFSPLAIHTRNILAEPRCTLVVQIPGWSCLSNARVTLFGDV 236


>At1g08800.1 68414.m00979 expressed protein weak similarity to
           SP|Q02455 Myosin-like protein MLP1 {Saccharomyces
           cerevisiae}; contains Pfam profile PF04576: Protein of
           unknown function, DUF593
          Length = 1113

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 80  SNSYGYELLDILDMYSLCILNSG 12
           +N Y  ELLD+ D Y++ + N G
Sbjct: 770 TNQYSGELLDLADAYNIVVGNEG 792


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,076,493
Number of Sequences: 28952
Number of extensions: 184127
Number of successful extensions: 443
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)