Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0645
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   140   2e-34
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    28   1.1  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    26   5.9  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   5.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  140 bits (339), Expect = 2e-34
 Identities = 70/146 (47%), Positives = 91/146 (62%)
 Frame = +2

Query: 239 SIFIIISLPVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGF 418
           SI ++++LPVLAG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P F
Sbjct: 199 SILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAF 258

Query: 419 GIISHIISQERGKKETFGCXXXXXXXXXXXXXDLLFEXXXXXXXXXXXXHEAYFTSATIS 598
           G++SHII      K  FG               L+                AYF++AT+ 
Sbjct: 259 GVVSHII-PSLAHKPIFGKEGMLWAMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAATMV 317

Query: 599 IAVPTGIKIFRXLATIHGTQINYTLI 676
           IA+PTGIKIF  LAT+ G  I ++ +
Sbjct: 318 IAIPTGIKIFSWLATLTGGAIQWSRV 343



 Score = 58.8 bits (136), Expect = 7e-10
 Identities = 33/76 (43%), Positives = 40/76 (52%)
 Frame = +3

Query: 15  IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 194
           + E G G G TVYPPLSS  +H G ++DLAI SL L GISS                   
Sbjct: 124 LTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGL 183

Query: 195 SFDQLPLFV*AVGITA 242
           S  Q+PLF  A+ IT+
Sbjct: 184 SLYQMPLFAWAIMITS 199


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 235 LQHFYYYITTCFSWSYY 285
           LQ+ YY +  CFS+SYY
Sbjct: 215 LQNLYYDLLLCFSYSYY 231


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 508 VLGFIV*AHHIFTVGIAIDTRGIFYFSYYK 597
           V+GF++ +  I   G+  D RG+   SY+K
Sbjct: 212 VIGFVILSIIIAAGGVPTDDRGVIGVSYWK 241


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 205 NYPYLYEL*GLQHFYYYITTCFSW 276
           NYPY +E      +YYYI + FSW
Sbjct: 268 NYPY-HEA---YEYYYYIRSSFSW 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,597
Number of Sequences: 5004
Number of extensions: 44513
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)