Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0645
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1170 - 11065780-11066145,11066297-11066425,11066675-11067673     28   6.1  
05_06_0251 + 26687833-26688120,26689288-26689365,26690499-266905...    28   6.1  
08_01_0680 - 5958066-5960253,5960707-5961503                           28   8.1  
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964...    28   8.1  

>07_01_1170 - 11065780-11066145,11066297-11066425,11066675-11067673
          Length = 497

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 575 MPRVSIAIPTVNI**AQTINPNTQLLV 495
           MP VS+++PTV I   Q++ PN   +V
Sbjct: 335 MPPVSVSVPTVKILVLQSVGPNLAAVV 361


>05_06_0251 +
           26687833-26688120,26689288-26689365,26690499-26690580,
           26691155-26691195,26691973-26692143,26693586-26693813,
           26694237-26694638
          Length = 429

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 415 IWYNFSYYFTRKRKKRNFWLFRNN 486
           IW  F+   T K K+ +FW+F+ +
Sbjct: 55  IWPKFAVALTNKEKEEDFWVFKGS 78


>08_01_0680 - 5958066-5960253,5960707-5961503
          Length = 994

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 520 IV*AHHIFTVGIAIDTRGIFYFSYYKYCCTNRN 618
           IV  HH   + +  + RG+ Y S  +  CTN N
Sbjct: 609 IVSLHHALVLELPTEIRGLQYLSTLEIDCTNEN 641


>03_02_0932 +
           12495700-12495738,12495859-12496093,12496178-12496423,
           12496519-12496572,12497329-12497589,12497750-12497802,
           12497893-12498016,12498147-12498401,12498798-12499888,
           12500001-12500007,12500316-12500445,12500617-12500731,
           12500783-12500853,12501246-12501354,12501550-12501738,
           12502519-12502644,12503048-12503563
          Length = 1206

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 331 CWRRRPNFISTFILIFWTS*SLYFNFTRI 417
           CWRR P     F+L F +  +LYF+ + I
Sbjct: 444 CWRRPPVLALCFLLFFGSVEALYFSASLI 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,841,595
Number of Sequences: 37544
Number of extensions: 262766
Number of successful extensions: 479
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)